Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 N 1.39867 * 119.72031 * 2 1 4 4 C 1.30349 * 121.03491 * 180.02562 * 3 2 1 5 5 C 1.41118 * 120.40920 * 0.02562 * 4 3 2 6 6 N 1.38485 * 120.29869 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47282 * 89.99593 * 14 12 10 16 16 H 1.48498 * 109.47211 * 210.00040 * 14 12 10 17 17 H 1.48506 * 109.46856 * 330.00220 * 14 12 10 18 18 C 1.38308 * 119.40046 * 0.22464 * 5 4 3 19 19 Cl 1.73597 * 120.49270 * 179.72977 * 18 5 4 20 20 C 1.34759 * 119.71962 * 180.02562 * 2 1 3 21 21 O 1.22154 * 120.20839 * 359.97359 * 20 2 1 22 22 H 1.08994 * 109.46843 * 359.97438 * 1 2 3 23 23 H 1.08986 * 109.47001 * 120.00256 * 1 2 3 24 24 H 1.09005 * 109.46664 * 239.99876 * 1 2 3 25 25 H 1.07994 * 119.79563 * 179.97438 * 4 3 2 26 26 H 0.97000 * 119.99551 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.47391 * 59.99921 * 7 6 5 28 28 H 1.09001 * 109.46813 * 299.99977 * 7 6 5 29 29 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 30 30 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 31 31 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 32 32 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 33 33 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1585 1.2147 0.0000 4 6 3.4617 1.2446 -0.0005 5 6 4.2037 0.0443 -0.0016 6 7 5.5881 0.0787 -0.0027 7 6 6.2888 1.3652 -0.0032 8 6 7.7995 1.1231 -0.0050 9 6 8.5314 2.4667 -0.0050 10 6 10.0194 2.2283 -0.0061 11 1 10.4046 1.2193 -0.0064 12 6 10.8890 3.2982 -0.0068 13 7 10.4199 4.5268 -0.0069 14 14 12.7335 3.0026 -0.0089 15 1 13.2208 2.9246 -1.4096 16 1 13.4149 4.1213 0.6907 17 1 13.0312 1.7268 0.6904 18 6 3.5358 -1.1669 -0.0069 19 17 4.4203 -2.6606 -0.0154 20 6 2.1332 -1.1703 -0.0005 21 8 1.5211 -2.2274 -0.0005 22 1 -0.3633 1.0276 0.0005 23 1 -0.3633 -0.5138 -0.8899 24 1 -0.3633 -0.5139 0.8900 25 1 3.9766 2.1938 -0.0009 26 1 6.0938 -0.7491 -0.0030 27 1 6.0121 1.9301 0.8870 28 1 6.0107 1.9300 -0.8930 29 1 8.0780 0.5581 0.8846 30 1 8.0760 0.5584 -0.8953 31 1 8.2530 3.0321 -0.8943 32 1 8.2549 3.0311 0.8856 33 1 11.0318 5.2795 -0.0078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264241190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -11.287871 kcal Electronic energy + Delta-G solvation = -17764.254592 eV Core-core repulsion = 14657.941109 eV Total energy + Delta-G solvation = -3106.313483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.00949 -39.30737 -37.96008 -37.29499 -35.82287 -34.39950 -33.17663 -31.54753 -28.86052 -27.61571 -25.67685 -24.93052 -23.21654 -22.19360 -19.49423 -18.77647 -18.46696 -18.23915 -17.30134 -16.58773 -16.50404 -16.32078 -15.99413 -15.38642 -14.68990 -14.59127 -14.24274 -14.19184 -13.73091 -13.44768 -13.39926 -13.04402 -12.78997 -12.65856 -12.46589 -12.33653 -11.98769 -11.93893 -11.47846 -11.37678 -11.21137 -11.02415 -10.51288 -9.93999 -8.95830 -8.18291 -6.26970 -0.62989 0.72300 0.89124 1.30208 1.42324 1.43740 1.53261 1.98038 2.24800 2.43380 3.10485 3.16744 3.54325 3.65215 4.04859 4.25303 4.37683 4.46790 4.50331 4.60148 4.73211 4.79283 4.92691 4.97981 5.02332 5.19964 5.54836 5.73808 5.78290 5.89254 6.17135 6.28237 6.48995 6.81072 6.90390 7.42201 8.92809 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.003410 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.012987 B = 8209.125767 C = 8977.081837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.431 5.431 3 N -0.188 5.188 4 C 0.075 3.925 5 C 0.273 3.727 6 N -0.685 5.685 7 C 0.109 3.891 8 C -0.111 4.111 9 C 0.027 3.973 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.954 3.046 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.281 4.281 19 Cl -0.041 7.041 20 C 0.524 3.476 21 O -0.579 6.579 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.236 0.764 26 H 0.412 0.588 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 -5.452 0.011 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.252 5.252 3 N -0.002 5.002 4 C -0.128 4.128 5 C 0.150 3.850 6 N -0.307 5.307 7 C -0.013 4.013 8 C -0.149 4.149 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.328 4.328 19 Cl -0.012 7.012 20 C 0.323 3.677 21 O -0.461 6.461 22 H 0.137 0.863 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.252 0.748 26 H 0.251 0.749 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.808 -5.259 0.015 17.612 hybrid contribution 2.111 -1.102 -0.008 2.382 sum -14.697 -6.362 0.007 16.015 Atomic orbital electron populations 1.22019 0.72828 1.05789 1.03684 1.49660 1.09380 1.01279 1.64839 1.75119 1.09462 1.06791 1.08784 1.24397 0.88933 0.98880 1.00558 1.18833 0.85999 0.92404 0.87770 1.45275 1.01823 1.11271 1.72307 1.21944 0.92029 0.83440 1.03868 1.21617 0.92379 0.99235 1.01648 1.18917 0.93642 0.92486 0.96043 1.21701 0.93416 0.92726 1.50315 0.92482 1.25824 1.03466 0.95068 0.95015 1.70050 1.36338 0.98730 1.51704 0.85607 0.80177 0.77917 0.78310 1.20092 1.21016 1.19081 1.21064 0.91881 0.87742 1.32079 1.98306 1.73321 1.31913 1.97688 1.16639 0.87757 0.84169 0.79180 1.90954 1.70129 1.29962 1.55094 0.86272 0.90339 0.90343 0.74819 0.74949 0.89111 0.89119 0.92277 0.92253 0.97725 0.97717 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.35 127.77 1.32 2.91 16 2 N -0.43 -10.05 3.91 -494.62 -1.93 -11.98 16 3 N -0.19 -3.72 11.50 -56.45 -0.65 -4.37 16 4 C 0.07 1.30 10.59 85.62 0.91 2.21 16 5 C 0.27 5.94 6.67 38.82 0.26 6.20 16 6 N -0.68 -14.43 5.65 -339.01 -1.91 -16.34 16 7 C 0.11 2.40 4.91 86.38 0.42 2.83 16 8 C -0.11 -3.50 5.27 30.59 0.16 -3.33 16 9 C 0.03 1.19 4.97 29.85 0.15 1.34 16 10 C -0.54 -28.13 9.11 25.60 0.23 -27.89 16 11 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 12 C 0.00 0.24 5.46 84.65 0.46 0.71 16 13 N -0.93 -52.50 13.29 21.45 0.28 -52.21 16 14 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C -0.28 -7.65 6.39 22.78 0.15 -7.51 16 19 Cl -0.04 -1.12 27.25 -2.72 -0.07 -1.19 16 20 C 0.52 15.50 7.48 84.74 0.63 16.13 16 21 O -0.58 -20.69 16.62 -5.82 -0.10 -20.79 16 22 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.24 2.43 6.77 -2.91 -0.02 2.41 16 26 H 0.41 8.99 7.17 -92.71 -0.66 8.33 16 27 H 0.09 1.76 7.95 -2.39 -0.02 1.75 16 28 H 0.09 1.76 7.95 -2.39 -0.02 1.74 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -67.26 303.09 2.81 -64.45 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.47 Total: 4.95 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.70 Total: -6.42 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -4.21 Total: -84.90 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.10 Total: -20.79 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -67.26 2.81 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264241190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.165 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds