Wall clock time and date at job start Mon Mar 30 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86793 * 119.99693 * 2 1 4 4 H 1.48497 * 109.47497 * 85.60343 * 3 2 1 5 5 H 1.48505 * 109.47125 * 205.60297 * 3 2 1 6 6 H 1.48499 * 109.47292 * 325.59973 * 3 2 1 7 7 C 1.38980 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 20.63176 * 7 2 1 9 9 N 1.36954 * 119.99946 * 200.62863 * 7 2 1 10 10 C 1.34778 * 119.99841 * 41.42872 * 9 7 2 11 11 O 1.21686 * 119.99929 * 356.45577 * 10 9 7 12 12 C 1.46985 * 120.00135 * 176.45493 * 10 9 7 13 13 C 1.36146 * 127.14466 * 327.66421 * 12 10 9 14 14 O 1.33819 * 109.83418 * 179.88725 * 13 12 10 15 15 C 1.34911 * 111.35356 * 0.39408 * 14 13 12 16 16 C 1.38969 * 133.10230 * 179.78931 * 15 14 13 17 17 C 1.37851 * 119.97436 * 179.97438 * 16 15 14 18 18 C 1.38680 * 120.65545 * 0.02562 * 17 16 15 19 19 C 1.37850 * 120.19966 * 359.95992 * 18 17 16 20 20 C 1.39106 * 119.62985 * 0.04179 * 19 18 17 21 21 C 1.46499 * 120.00087 * 221.42599 * 9 7 2 22 22 C 1.53000 * 117.49785 * 2.80557 * 21 9 7 23 23 C 1.52995 * 117.49790 * 294.15005 * 21 9 7 24 24 H 0.96993 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08005 * 125.08532 * 0.03314 * 13 12 10 26 26 H 1.08000 * 120.01153 * 359.94812 * 16 15 14 27 27 H 1.07996 * 119.67280 * 180.02562 * 17 16 15 28 28 H 1.07996 * 119.89946 * 180.02562 * 18 17 16 29 29 H 1.07994 * 120.18347 * 180.02562 * 19 18 17 30 30 H 1.08997 * 115.54923 * 148.47575 * 21 9 7 31 31 H 1.09002 * 117.49972 * 0.02562 * 22 21 9 32 32 H 1.08998 * 117.49957 * 145.01953 * 22 21 9 33 33 H 1.09005 * 117.49831 * 214.97664 * 23 21 9 34 34 H 1.09005 * 117.49980 * 359.97219 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4026 2.1001 1.3959 5 1 3.5891 1.4152 -0.6050 6 1 1.4951 2.6240 -0.7910 7 6 2.0091 -1.2036 0.0005 8 1 1.5211 -2.1091 -0.3286 9 7 3.3128 -1.2414 0.4184 10 6 3.6943 -0.5345 1.5007 11 8 2.8960 0.1876 2.0681 12 6 5.0746 -0.6358 1.9956 13 6 5.8886 -1.7259 1.9436 14 8 7.0738 -1.4341 2.4922 15 6 7.1087 -0.1613 2.9380 16 6 8.0866 0.5968 3.5707 17 6 7.8273 1.9061 3.9155 18 6 6.5956 2.4797 3.6380 19 6 5.6133 1.7435 3.0108 20 6 5.8641 0.4214 2.6584 21 6 4.2926 -2.0502 -0.3109 22 6 3.8126 -2.7771 -1.5687 23 6 4.1087 -3.5689 -0.2927 24 1 -0.4850 0.8400 0.0004 25 1 5.6191 -2.6824 1.5206 26 1 9.0492 0.1602 3.7925 27 1 8.5910 2.4909 4.4066 28 1 6.4058 3.5067 3.9132 29 1 4.6544 2.1906 2.7944 30 1 5.3129 -1.6667 -0.3097 31 1 2.7678 -2.6532 -1.8538 32 1 4.5172 -2.8722 -2.3949 33 1 5.0080 -4.1847 -0.2800 34 1 3.2589 -3.9664 0.2623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264938594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:33 Heat of formation + Delta-G solvation = 46.693656 kcal Electronic energy + Delta-G solvation = -20714.150248 eV Core-core repulsion = 17580.491131 eV Total energy + Delta-G solvation = -3133.659117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29965 -39.03097 -37.72087 -36.46815 -33.09933 -32.55619 -31.42215 -30.24292 -29.26870 -25.36985 -23.46640 -22.64246 -22.16555 -21.81619 -20.92352 -19.46228 -17.87325 -17.07535 -16.40852 -16.07353 -15.85711 -15.38165 -14.90105 -14.52403 -14.01248 -13.67566 -13.65915 -13.41060 -13.00811 -12.70941 -12.32277 -12.15555 -11.77711 -11.55379 -11.16778 -11.07834 -10.82480 -10.49528 -10.24883 -10.02876 -9.87967 -9.71547 -8.63178 -8.56141 -8.51678 -7.93472 -7.60721 -6.26367 -4.02542 1.01017 1.45524 2.19115 2.87966 3.36866 3.49194 3.64734 3.75645 3.99558 4.18048 4.41843 4.56825 4.69705 4.83152 5.04465 5.09386 5.23800 5.31960 5.36764 5.43230 5.51453 5.54962 5.62388 5.78366 5.94891 6.00484 6.19746 6.32025 6.38887 6.50519 6.53667 6.63135 6.75369 6.76010 7.27162 7.75825 7.88609 8.67614 8.81219 9.33827 9.72210 10.77256 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.008294 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.558830 B = 3375.200207 C = 4506.858871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.094 3.906 3 Si 0.915 3.085 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.310 1.310 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.423 5.423 10 C 0.510 3.490 11 O -0.534 6.534 12 C -0.190 4.190 13 C 0.030 3.970 14 O -0.191 6.191 15 C 0.045 3.955 16 C -0.111 4.111 17 C -0.098 4.098 18 C -0.140 4.140 19 C -0.059 4.059 20 C -0.096 4.096 21 C 0.052 3.948 22 C -0.166 4.166 23 C -0.205 4.205 24 H 0.274 0.726 25 H 0.219 0.781 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.562 -1.104 2.882 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.116 4.116 3 Si 0.746 3.254 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.240 1.240 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.142 5.142 10 C 0.301 3.699 11 O -0.417 6.417 12 C -0.195 4.195 13 C -0.037 4.037 14 O -0.092 6.092 15 C -0.002 4.002 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.159 4.159 19 C -0.077 4.077 20 C -0.098 4.098 21 C -0.054 4.054 22 C -0.203 4.203 23 C -0.244 4.244 24 H 0.084 0.916 25 H 0.235 0.765 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.169 -0.833 3.184 15.522 hybrid contribution 0.172 0.686 -0.188 0.732 sum 15.340 -0.147 2.996 15.631 Atomic orbital electron populations 1.69747 1.06882 1.28461 1.44164 1.25318 0.94928 0.99630 0.91724 0.86310 0.78953 0.81903 0.78198 1.17659 1.20758 1.23951 1.18697 0.83958 0.96360 1.48493 0.88356 1.42993 1.08140 1.41238 1.21814 1.17070 0.85434 0.85671 0.81682 1.90639 1.52720 1.39960 1.58428 1.21431 0.96985 0.93904 1.07175 1.24732 0.81768 1.00161 0.97063 1.83812 1.34635 1.27535 1.63173 1.19607 0.96248 0.83296 1.01046 1.19841 0.97750 0.93447 1.01944 1.20855 0.97289 0.93695 0.99806 1.21040 0.93448 1.00262 1.01106 1.20754 0.99726 0.91812 0.95405 1.19616 0.93201 0.95179 1.01754 1.21995 0.93967 0.90070 0.99362 1.23173 1.03943 1.02489 0.90733 1.23435 1.03373 0.94579 1.03028 0.91622 0.76532 0.85244 0.84991 0.85380 0.84920 0.87091 0.86789 0.89162 0.89090 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.99 13.96 55.50 0.77 -25.22 16 2 C 0.09 2.77 4.83 -17.45 -0.08 2.68 16 3 Si 0.91 24.73 24.79 -169.99 -4.21 20.52 16 4 H -0.25 -7.01 6.16 56.52 0.35 -6.66 16 5 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 7 C -0.35 -9.67 8.55 -14.99 -0.13 -9.80 16 8 H 0.10 2.79 7.25 -52.49 -0.38 2.40 16 9 N -0.42 -10.19 2.51 -109.09 -0.27 -10.46 16 10 C 0.51 12.73 5.99 -12.72 -0.08 12.65 16 11 O -0.53 -15.30 12.10 5.20 0.06 -15.24 16 12 C -0.19 -3.93 5.66 -103.26 -0.58 -4.52 16 13 C 0.03 0.49 9.84 29.98 0.29 0.78 16 14 O -0.19 -3.04 10.53 5.30 0.06 -2.99 16 15 C 0.04 0.74 7.39 -38.56 -0.28 0.45 16 16 C -0.11 -1.46 10.06 -39.45 -0.40 -1.85 16 17 C -0.10 -1.18 10.01 -39.56 -0.40 -1.57 16 18 C -0.14 -1.95 10.04 -39.56 -0.40 -2.35 16 19 C -0.06 -1.07 10.09 -39.40 -0.40 -1.47 16 20 C -0.10 -1.86 6.36 -104.98 -0.67 -2.52 16 21 C 0.05 0.95 4.47 -67.93 -0.30 0.65 16 22 C -0.17 -2.74 9.79 -26.70 -0.26 -3.00 16 23 C -0.21 -3.11 9.42 -26.70 -0.25 -3.36 16 24 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 25 H 0.22 2.94 5.84 -52.48 -0.31 2.64 16 26 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 30 H 0.11 1.85 6.40 -51.93 -0.33 1.52 16 31 H 0.11 2.16 6.65 -51.93 -0.35 1.81 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 287.86 15.07 4.34 4.34 Total: -1.00 -33.80 287.86 -6.70 -40.51 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.51 Total: 1.75 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.94 Total: -13.21 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.50 Total: -35.68 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.12 Total: -18.22 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.21 Total: 20.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.80 -6.70 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264938594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.199 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds