Wall clock time and date at job start Mon Mar 30 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86793 * 119.99693 * 2 1 4 4 H 1.48497 * 109.47497 * 85.60343 * 3 2 1 5 5 H 1.48505 * 109.47125 * 205.60297 * 3 2 1 6 6 H 1.48499 * 109.47292 * 325.59973 * 3 2 1 7 7 C 1.38980 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00103 * 20.63176 * 7 2 1 9 9 N 1.36954 * 119.99946 * 200.62863 * 7 2 1 10 10 C 1.34778 * 119.99841 * 41.42872 * 9 7 2 11 11 O 1.21686 * 119.99929 * 356.45577 * 10 9 7 12 12 C 1.46985 * 120.00135 * 176.45493 * 10 9 7 13 13 C 1.36146 * 127.14466 * 327.66421 * 12 10 9 14 14 O 1.33819 * 109.83418 * 179.88725 * 13 12 10 15 15 C 1.34911 * 111.35356 * 0.39408 * 14 13 12 16 16 C 1.38969 * 133.10230 * 179.78931 * 15 14 13 17 17 C 1.37851 * 119.97436 * 179.97438 * 16 15 14 18 18 C 1.38680 * 120.65545 * 0.02562 * 17 16 15 19 19 C 1.37850 * 120.19966 * 359.95992 * 18 17 16 20 20 C 1.39106 * 119.62985 * 0.04179 * 19 18 17 21 21 C 1.46499 * 120.00087 * 221.42599 * 9 7 2 22 22 C 1.53000 * 117.49785 * 2.80557 * 21 9 7 23 23 C 1.52995 * 117.49790 * 294.15005 * 21 9 7 24 24 H 0.96993 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08005 * 125.08532 * 0.03314 * 13 12 10 26 26 H 1.08000 * 120.01153 * 359.94812 * 16 15 14 27 27 H 1.07996 * 119.67280 * 180.02562 * 17 16 15 28 28 H 1.07996 * 119.89946 * 180.02562 * 18 17 16 29 29 H 1.07994 * 120.18347 * 180.02562 * 19 18 17 30 30 H 1.08997 * 115.54923 * 148.47575 * 21 9 7 31 31 H 1.09002 * 117.49972 * 0.02562 * 22 21 9 32 32 H 1.08998 * 117.49957 * 145.01953 * 22 21 9 33 33 H 1.09005 * 117.49831 * 214.97664 * 23 21 9 34 34 H 1.09005 * 117.49980 * 359.97219 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4026 2.1001 1.3959 5 1 3.5891 1.4152 -0.6050 6 1 1.4951 2.6240 -0.7910 7 6 2.0091 -1.2036 0.0005 8 1 1.5211 -2.1091 -0.3286 9 7 3.3128 -1.2414 0.4184 10 6 3.6943 -0.5345 1.5007 11 8 2.8960 0.1876 2.0681 12 6 5.0746 -0.6358 1.9956 13 6 5.8886 -1.7259 1.9436 14 8 7.0738 -1.4341 2.4922 15 6 7.1087 -0.1613 2.9380 16 6 8.0866 0.5968 3.5707 17 6 7.8273 1.9061 3.9155 18 6 6.5956 2.4797 3.6380 19 6 5.6133 1.7435 3.0108 20 6 5.8641 0.4214 2.6584 21 6 4.2926 -2.0502 -0.3109 22 6 3.8126 -2.7771 -1.5687 23 6 4.1087 -3.5689 -0.2927 24 1 -0.4850 0.8400 0.0004 25 1 5.6191 -2.6824 1.5206 26 1 9.0492 0.1602 3.7925 27 1 8.5910 2.4909 4.4066 28 1 6.4058 3.5067 3.9132 29 1 4.6544 2.1906 2.7944 30 1 5.3129 -1.6667 -0.3097 31 1 2.7678 -2.6532 -1.8538 32 1 4.5172 -2.8722 -2.3949 33 1 5.0080 -4.1847 -0.2800 34 1 3.2589 -3.9664 0.2623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264938594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:33 Heat of formation + Delta-G solvation = 24.026032 kcal Electronic energy + Delta-G solvation = -20715.133190 eV Core-core repulsion = 17580.491131 eV Total energy + Delta-G solvation = -3134.642059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.58742 -40.82143 -38.87815 -38.09936 -35.06410 -34.04832 -33.27261 -31.42198 -30.56213 -27.31366 -24.84249 -24.11512 -23.40189 -23.06646 -22.45907 -21.22356 -19.43795 -18.36725 -18.11486 -17.54290 -17.25463 -16.76142 -16.60152 -16.10863 -15.51340 -15.32431 -15.22757 -14.80844 -14.70154 -14.55887 -13.73499 -13.43365 -13.30655 -13.04131 -12.87856 -12.66787 -12.26321 -12.19710 -11.99545 -11.75266 -11.37423 -11.19854 -10.75331 -10.51226 -9.69419 -9.51448 -9.23226 -8.51166 -6.23541 -0.21500 0.28561 0.76064 1.21220 1.29154 1.43363 1.64010 2.08332 2.38073 2.50574 2.71688 2.88523 3.11516 3.46313 3.54588 3.90783 3.92782 4.03711 4.08894 4.18968 4.27353 4.32316 4.41141 4.54050 4.77303 4.84935 4.94457 5.10412 5.19852 5.21075 5.35688 5.42508 5.46982 5.58735 5.61637 5.78078 6.05437 6.66357 6.78736 7.23217 7.76393 8.56305 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.008294 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.558830 B = 3375.200207 C = 4506.858871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.050 3.950 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.303 1.303 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.438 5.438 10 C 0.509 3.491 11 O -0.587 6.587 12 C -0.248 4.248 13 C 0.079 3.921 14 O -0.177 6.177 15 C 0.032 3.968 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.129 4.129 21 C 0.021 3.979 22 C -0.166 4.166 23 C -0.172 4.172 24 H 0.274 0.726 25 H 0.250 0.750 26 H 0.172 0.828 27 H 0.184 0.816 28 H 0.154 0.846 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.697 -2.195 3.463 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.155 4.155 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.232 1.232 7 C -0.466 4.466 8 H 0.100 0.900 9 N -0.157 5.157 10 C 0.302 3.698 11 O -0.474 6.474 12 C -0.252 4.252 13 C 0.012 3.988 14 O -0.077 6.077 15 C -0.014 4.014 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.083 4.083 22 C -0.203 4.203 23 C -0.211 4.211 24 H 0.083 0.917 25 H 0.266 0.734 26 H 0.190 0.810 27 H 0.201 0.799 28 H 0.172 0.828 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.342 -1.947 3.735 20.774 hybrid contribution -1.250 0.960 -0.254 1.597 sum 19.092 -0.987 3.481 19.432 Atomic orbital electron populations 1.69815 1.07723 1.28742 1.47515 1.25861 0.95380 1.01777 0.92531 0.85556 0.78262 0.80275 0.76552 1.20476 1.20465 1.23240 1.18622 0.86085 0.95191 1.46660 0.90022 1.43123 1.08010 1.42204 1.22373 1.17760 0.86950 0.84061 0.81056 1.90580 1.54750 1.42171 1.59933 1.21136 0.95862 0.96935 1.11307 1.25112 0.80677 0.99542 0.93519 1.83843 1.33774 1.27438 1.62599 1.19986 0.96004 0.83258 1.02200 1.20474 0.98305 0.93324 0.99249 1.21443 0.97039 0.93602 0.98196 1.21422 0.93182 1.01053 0.98574 1.20711 0.99831 0.92674 0.99278 1.19848 0.94654 0.95647 1.02949 1.22325 0.93597 0.91496 1.00892 1.23240 1.02986 1.02185 0.91935 1.23524 1.04657 0.92242 1.00628 0.91675 0.73412 0.81042 0.79902 0.82809 0.88917 0.84716 0.90181 0.85273 0.83708 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.70 13.96 21.67 0.30 -57.40 16 2 C 0.05 3.08 4.83 84.93 0.41 3.49 16 3 Si 0.96 54.42 24.79 68.60 1.70 56.12 16 4 H -0.28 -16.74 6.16 99.48 0.61 -16.12 16 5 H -0.28 -15.31 7.11 99.48 0.71 -14.60 16 6 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 7 C -0.34 -19.61 8.55 84.07 0.72 -18.89 16 8 H 0.08 4.89 7.25 -2.91 -0.02 4.87 16 9 N -0.44 -21.60 2.51 -617.26 -1.55 -23.15 16 10 C 0.51 26.37 5.99 86.54 0.52 26.89 16 11 O -0.59 -35.94 12.10 -4.30 -0.05 -36.00 16 12 C -0.25 -10.27 5.66 -18.98 -0.11 -10.38 16 13 C 0.08 2.40 9.84 67.33 0.66 3.06 16 14 O -0.18 -4.96 10.53 -3.97 -0.04 -5.00 16 15 C 0.03 0.95 7.39 22.93 0.17 1.12 16 16 C -0.10 -2.00 10.06 22.35 0.22 -1.77 16 17 C -0.09 -1.60 10.01 22.28 0.22 -1.38 16 18 C -0.12 -3.19 10.04 22.28 0.22 -2.96 16 19 C -0.11 -3.98 10.09 22.39 0.23 -3.76 16 20 C -0.13 -5.00 6.36 -20.09 -0.13 -5.13 16 21 C 0.02 0.73 4.47 44.99 0.20 0.93 16 22 C -0.17 -5.16 9.79 30.62 0.30 -4.86 16 23 C -0.17 -4.64 9.42 30.61 0.29 -4.36 16 24 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 25 H 0.25 5.65 5.84 -2.91 -0.02 5.64 16 26 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 27 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.09 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.14 4.08 6.40 -2.39 -0.02 4.07 16 31 H 0.08 3.07 6.65 -2.39 -0.02 3.06 16 32 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.15 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -82.94 287.86 5.33 -77.61 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.04 Total: 5.79 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.93 Total: -17.98 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.25 Total: -80.55 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.09 Total: -41.00 kcal Atomic # 14 Polarization: 54.42 SS G_CDS: 1.70 Total: 56.12 kcal Total: -82.94 5.33 -77.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264938594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.640 kcal (2) G-P(sol) polarization free energy of solvation -82.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds