Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.50704 * 109.46706 * 240.00714 * 2 1 3 5 5 H 1.08005 * 119.99305 * 275.02449 * 4 2 1 6 6 C 1.37873 * 120.00482 * 95.02199 * 4 2 1 7 7 N 1.31511 * 120.00292 * 184.87128 * 6 4 2 8 8 Si 1.86799 * 119.99737 * 4.87745 * 6 4 2 9 9 H 1.48504 * 109.47238 * 84.74820 * 8 6 4 10 10 H 1.48504 * 109.47362 * 204.74846 * 8 6 4 11 11 H 1.48504 * 109.47263 * 324.75047 * 8 6 4 12 12 N 1.46893 * 109.47033 * 120.00907 * 2 1 3 13 13 C 1.46908 * 110.99755 * 176.04578 * 12 2 1 14 14 C 1.38486 * 110.99957 * 299.99278 * 12 2 1 15 15 C 1.41118 * 120.30241 * 299.98357 * 14 12 2 16 16 N 1.30346 * 120.41178 * 180.02562 * 15 14 12 17 17 N 1.39865 * 121.03556 * 359.75209 * 16 15 14 18 18 C 1.46501 * 119.72614 * 180.27886 * 17 16 15 19 19 C 1.34765 * 120.55554 * 0.51090 * 17 16 15 20 20 O 1.22156 * 120.20826 * 179.77367 * 19 17 16 21 21 C 1.38305 * 120.29860 * 120.00553 * 14 12 2 22 22 Cl 1.73598 * 120.49121 * 359.95429 * 21 14 12 23 23 H 1.08999 * 109.46987 * 175.30671 * 1 2 3 24 24 H 1.09000 * 109.46513 * 295.30942 * 1 2 3 25 25 H 1.08996 * 109.46868 * 55.30220 * 1 2 3 26 26 H 0.96996 * 119.99912 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46936 * 183.95403 * 13 12 2 28 28 H 1.08997 * 109.46775 * 303.94586 * 13 12 2 29 29 H 1.08991 * 109.47365 * 63.94901 * 13 12 2 30 30 H 1.08003 * 119.78965 * 0.04375 * 15 14 12 31 31 H 1.08992 * 109.47414 * 270.22842 * 18 17 16 32 32 H 1.09001 * 109.46712 * 30.22536 * 18 17 16 33 33 H 1.08998 * 109.47269 * 150.22258 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1350 -1.7854 -1.2293 6 6 2.3606 0.0123 -2.3580 7 7 2.7070 -0.6128 -3.4620 8 14 2.3135 1.8792 -2.3173 9 1 3.5980 2.3952 -1.7795 10 1 2.1083 2.3994 -3.6930 11 1 1.1968 2.3274 -1.4469 12 7 2.0197 -0.6927 1.1993 13 6 3.4852 -0.7947 1.1868 14 6 1.5758 -0.0648 2.3510 15 6 1.9169 1.2808 2.6051 16 7 1.5007 1.8737 3.6887 17 7 0.7055 1.1983 4.6203 18 6 0.2485 1.8944 5.8256 19 6 0.3601 -0.0890 4.4207 20 8 -0.3312 -0.6740 5.2405 21 6 0.7944 -0.7509 3.2629 22 17 0.3573 -2.4067 2.9784 23 1 -0.3633 -1.0242 -0.0841 24 1 -0.3632 0.4393 0.9291 25 1 -0.3633 0.5850 -0.8449 26 1 2.9384 -0.1044 -4.2550 27 1 3.8165 -1.3725 2.0497 28 1 3.8069 -1.2916 0.2717 29 1 3.9193 0.2041 1.2299 30 1 2.5265 1.8227 1.8972 31 1 0.9817 1.7628 6.6212 32 1 0.1331 2.9566 5.6099 33 1 -0.7094 1.4818 6.1423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267349010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = 23.526949 kcal Electronic energy + Delta-G solvation = -19277.612735 eV Core-core repulsion = 16172.808935 eV Total energy + Delta-G solvation = -3104.803799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31123 -39.97884 -38.12390 -37.47265 -35.19923 -34.10817 -32.43948 -31.72245 -28.86119 -27.24204 -26.13266 -25.37579 -23.91208 -21.58261 -19.77429 -19.03805 -18.74630 -17.64123 -17.44516 -16.76175 -16.47489 -15.66119 -15.52079 -14.87132 -14.80130 -14.52643 -14.42728 -14.15617 -13.50888 -13.46995 -13.15311 -13.03572 -12.92068 -12.79275 -12.59524 -12.27514 -12.22440 -11.90861 -11.78874 -11.34006 -11.16160 -10.76004 -10.58301 -9.72177 -9.33755 -8.24677 -6.30029 -0.97107 0.44645 0.71670 1.19773 1.38127 1.42371 1.50177 2.00590 2.36892 2.60089 2.96700 3.13781 3.53736 3.79941 4.11808 4.33694 4.41106 4.44297 4.49684 4.62338 4.68776 4.73018 4.76604 4.81494 4.89792 5.00530 5.27398 5.40434 5.60795 5.91503 6.18520 6.27792 6.55826 6.59148 6.79675 7.35109 8.91118 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025155 B = 0.006889 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.829536 B = 4063.500332 C = 4681.115360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.192 3.808 3 H 0.025 0.975 4 C -0.497 4.497 5 H 0.040 0.960 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.925 3.075 9 H -0.254 1.254 10 H -0.294 1.294 11 H -0.242 1.242 12 N -0.513 5.513 13 C 0.043 3.957 14 C 0.160 3.840 15 C 0.060 3.940 16 N -0.199 5.199 17 N -0.411 5.411 18 C 0.089 3.911 19 C 0.507 3.493 20 O -0.557 6.557 21 C -0.119 4.119 22 Cl -0.011 7.011 23 H 0.046 0.954 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.219 0.781 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 8.198 14.736 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.043 0.957 4 C -0.536 4.536 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.748 3.252 9 H -0.179 1.179 10 H -0.220 1.220 11 H -0.166 1.166 12 N -0.235 5.235 13 C -0.103 4.103 14 C 0.057 3.943 15 C -0.141 4.141 16 N -0.013 5.013 17 N -0.231 5.231 18 C -0.050 4.050 19 C 0.302 3.698 20 O -0.437 6.437 21 C -0.158 4.158 22 Cl 0.019 6.981 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.326 8.112 15.554 17.593 hybrid contribution 0.215 0.053 -1.111 1.133 sum -1.111 8.165 14.444 16.629 Atomic orbital electron populations 1.21897 0.96832 1.01082 0.99078 1.19721 0.92828 0.92272 0.86400 0.95732 1.20817 1.43095 0.94239 0.95441 0.94146 1.25767 0.94107 1.03023 0.94690 1.70026 1.47309 1.37971 1.02667 0.86072 0.80620 0.80557 0.77901 1.17852 1.22011 1.16580 1.59439 1.12906 1.51777 0.99401 1.22292 0.83376 1.01298 1.03293 1.20089 0.91481 0.90932 0.91791 1.24995 0.99994 0.93755 0.95341 1.75177 1.03521 1.22750 0.99876 1.49837 1.42945 1.09446 1.20825 1.22188 1.01551 0.98977 0.82302 1.16929 0.82916 0.82726 0.87221 1.90993 1.40391 1.65254 1.47081 1.22584 1.05075 0.90898 0.97256 1.98366 1.91143 1.13265 1.95369 0.93482 0.94765 0.92951 0.92431 0.91014 0.90598 0.93563 0.76523 0.89196 0.86754 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.14 71.98 0.66 -4.46 16 2 C 0.19 7.73 1.50 44.17 0.07 7.80 16 3 H 0.03 0.94 4.28 -2.39 -0.01 0.93 16 4 C -0.50 -25.04 7.39 25.60 0.19 -24.85 16 5 H 0.04 2.36 8.05 -2.91 -0.02 2.34 16 6 C 0.02 1.19 5.47 84.65 0.46 1.65 16 7 N -0.94 -54.09 13.96 21.45 0.30 -53.79 16 8 Si 0.93 38.15 26.99 68.60 1.85 40.00 16 9 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.24 -9.06 6.82 99.48 0.68 -8.38 16 12 N -0.51 -18.38 4.01 -699.75 -2.81 -21.18 16 13 C 0.04 1.37 9.11 127.69 1.16 2.54 16 14 C 0.16 5.03 3.21 38.81 0.12 5.16 16 15 C 0.06 1.54 9.86 85.62 0.84 2.38 16 16 N -0.20 -4.90 11.53 -56.44 -0.65 -5.56 16 17 N -0.41 -10.69 3.91 -494.62 -1.93 -12.62 16 18 C 0.09 1.55 10.72 127.77 1.37 2.91 16 19 C 0.51 16.39 7.48 84.74 0.63 17.03 16 20 O -0.56 -20.36 16.19 -5.83 -0.09 -20.45 16 21 C -0.12 -3.98 6.39 22.78 0.15 -3.83 16 22 Cl -0.01 -0.37 28.08 -2.72 -0.08 -0.45 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.03 1.20 7.06 -2.39 -0.02 1.18 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.08 2.89 6.82 -2.39 -0.02 2.87 16 29 H 0.05 1.26 7.35 -2.39 -0.02 1.24 16 30 H 0.22 4.54 7.06 -2.91 -0.02 4.52 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.67 7.41 -2.39 -0.02 1.66 16 Total: -1.00 -63.23 293.02 3.35 -59.88 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.10 Total: 7.85 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.66 Total: 6.33 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -5.09 Total: -93.15 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.09 Total: -20.45 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.85 Total: 40.00 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -63.23 3.35 -59.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267349010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.404 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds