Wall clock time and date at job start Mon Mar 30 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46967 * 2 1 4 4 C 1.50703 * 109.47001 * 120.00121 * 2 1 3 5 5 H 1.07998 * 120.00040 * 120.00628 * 4 2 1 6 6 C 1.37880 * 119.99831 * 299.99852 * 4 2 1 7 7 N 1.31516 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47318 * 89.99723 * 8 6 4 10 10 H 1.48493 * 109.47401 * 210.00001 * 8 6 4 11 11 H 1.48506 * 109.47208 * 330.00082 * 8 6 4 12 12 N 1.46897 * 109.47094 * 240.00030 * 2 1 3 13 13 C 1.46904 * 111.00043 * 183.95296 * 12 2 1 14 14 C 1.38476 * 111.00007 * 59.99877 * 12 2 1 15 15 C 1.41118 * 120.30123 * 60.22122 * 14 12 2 16 16 N 1.30363 * 120.41302 * 180.28712 * 15 14 12 17 17 N 1.39871 * 121.02970 * 359.74235 * 16 15 14 18 18 C 1.46492 * 119.71875 * 179.97438 * 17 16 15 19 19 C 1.34760 * 120.55995 * 0.02562 * 17 16 15 20 20 O 1.22150 * 120.21020 * 179.97438 * 19 17 16 21 21 C 1.38307 * 120.30068 * 239.99727 * 14 12 2 22 22 Cl 1.73599 * 120.49265 * 0.02562 * 21 14 12 23 23 H 1.09007 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46851 * 299.99389 * 1 2 3 25 25 H 1.08993 * 109.47193 * 59.99900 * 1 2 3 26 26 H 0.96998 * 119.99492 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46987 * 296.04794 * 13 12 2 28 28 H 1.09000 * 109.47122 * 56.04567 * 13 12 2 29 29 H 1.08993 * 109.47035 * 176.04877 * 13 12 2 30 30 H 1.08000 * 119.79832 * 0.02562 * 15 14 12 31 31 H 1.08996 * 109.47793 * 270.02852 * 18 17 16 32 32 H 1.09009 * 109.47140 * 30.02656 * 18 17 16 33 33 H 1.09004 * 109.47200 * 150.01943 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5757 -0.0646 -2.3510 15 6 1.9203 1.2797 -2.6070 16 7 1.4988 1.8747 -3.6877 17 7 0.7033 1.1993 -4.6191 18 6 0.2451 1.8960 -5.8235 19 6 0.3540 -0.0865 -4.4173 20 8 -0.3413 -0.6700 -5.2346 21 6 0.7943 -0.7506 -3.2629 22 17 0.3577 -2.4067 -2.9789 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7082 1.1608 3.4844 27 1 3.9192 0.2044 -1.2300 28 1 3.8070 -1.2915 -0.2719 29 1 3.8164 -1.3720 -2.0500 30 1 2.5335 1.8204 -1.9013 31 1 -0.7127 2.3761 -5.6235 32 1 0.9779 2.6515 -6.1073 33 1 0.1295 1.1788 -6.6363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267349011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:57 Heat of formation + Delta-G solvation = 25.453831 kcal Electronic energy + Delta-G solvation = -19196.744488 eV Core-core repulsion = 16092.024244 eV Total energy + Delta-G solvation = -3104.720244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.27341 -39.90030 -38.09172 -37.44249 -35.30487 -34.07720 -32.18653 -31.16939 -28.86321 -27.20798 -26.05257 -25.34571 -23.98396 -21.75261 -19.67425 -18.90036 -18.19488 -17.65247 -17.41002 -16.84746 -16.36477 -15.68519 -15.49627 -14.93005 -14.80013 -14.46200 -14.11945 -13.89623 -13.51564 -13.35754 -13.03525 -12.94348 -12.79582 -12.75263 -12.63663 -12.19521 -12.06545 -12.01848 -11.87797 -11.26007 -10.99575 -10.58091 -10.49555 -9.69398 -9.27764 -8.10329 -6.20661 -0.93344 0.47864 0.73755 1.22085 1.47276 1.51050 1.59166 2.03129 2.43846 2.72832 3.02902 3.22064 3.59283 3.84725 4.15130 4.40095 4.43870 4.54724 4.64591 4.71198 4.73766 4.83373 4.83669 4.96328 5.04177 5.23156 5.39340 5.70957 5.75048 6.11679 6.20718 6.29605 6.56659 6.60455 6.89214 7.48114 8.95763 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.005970 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.798904 B = 4688.725557 C = 5064.794821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.227 3.773 3 H 0.002 0.998 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.271 1.271 12 N -0.514 5.514 13 C 0.039 3.961 14 C 0.166 3.834 15 C 0.064 3.936 16 N -0.203 5.203 17 N -0.412 5.412 18 C 0.089 3.911 19 C 0.506 3.494 20 O -0.559 6.559 21 C -0.123 4.123 22 Cl -0.011 7.011 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.008 0.992 26 H 0.262 0.738 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.216 0.784 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 2.629 -11.206 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.196 1.196 12 N -0.237 5.237 13 C -0.107 4.107 14 C 0.063 3.937 15 C -0.137 4.137 16 N -0.017 5.017 17 N -0.232 5.232 18 C -0.050 4.050 19 C 0.302 3.698 20 O -0.439 6.439 21 C -0.163 4.163 22 Cl 0.019 6.981 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.822 2.640 -12.062 12.666 hybrid contribution 0.122 -0.582 1.504 1.617 sum 2.944 2.058 -10.558 11.152 Atomic orbital electron populations 1.21660 0.97973 0.99168 0.99117 1.19207 0.91937 0.91597 0.84989 0.98075 1.21313 1.31373 1.12619 0.90054 0.91385 1.25573 0.95218 0.95619 1.01582 1.69982 1.37382 1.24061 1.24195 0.85579 0.77977 0.79095 0.79102 1.19902 1.21694 1.19589 1.59480 1.12790 1.51765 0.99688 1.22376 0.83508 1.01272 1.03507 1.20090 0.91206 0.90792 0.91661 1.24982 0.99706 0.93787 0.95176 1.75181 1.03699 1.22595 1.00225 1.49827 1.42909 1.09595 1.20824 1.22181 1.01883 0.98389 0.82549 1.16940 0.82954 0.82669 0.87270 1.90977 1.40306 1.65627 1.47008 1.22566 1.05211 0.90983 0.97492 1.98351 1.91231 1.13141 1.95420 0.95210 0.91345 0.97270 0.92873 0.93871 0.89798 0.91111 0.76745 0.89739 0.86533 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.84 71.98 0.64 -4.99 16 2 C 0.23 10.04 1.84 44.17 0.08 10.13 16 3 H 0.00 0.08 7.14 -2.39 -0.02 0.06 16 4 C -0.52 -25.13 7.88 25.60 0.20 -24.93 16 5 H 0.07 3.27 6.41 -2.91 -0.02 3.25 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -48.57 11.32 21.45 0.24 -48.33 16 8 Si 0.96 40.58 29.54 68.60 2.03 42.61 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.51 -19.26 4.01 -699.76 -2.81 -22.07 16 13 C 0.04 1.21 9.10 127.69 1.16 2.37 16 14 C 0.17 5.67 3.28 38.82 0.13 5.80 16 15 C 0.06 1.86 9.86 85.62 0.84 2.71 16 16 N -0.20 -5.64 11.53 -56.44 -0.65 -6.29 16 17 N -0.41 -11.85 3.91 -494.63 -1.93 -13.78 16 18 C 0.09 1.75 10.72 127.77 1.37 3.12 16 19 C 0.51 17.69 7.48 84.74 0.63 18.32 16 20 O -0.56 -21.63 16.19 -5.81 -0.09 -21.73 16 21 C -0.12 -4.44 6.39 22.78 0.15 -4.30 16 22 Cl -0.01 -0.39 28.08 -2.72 -0.08 -0.47 16 23 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 25 H 0.01 0.37 7.22 -2.39 -0.02 0.35 16 26 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 27 H 0.04 1.19 7.33 -2.39 -0.02 1.17 16 28 H 0.08 2.84 6.10 -2.39 -0.01 2.82 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.22 5.39 7.06 -2.91 -0.02 5.37 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.09 1.86 7.41 -2.39 -0.02 1.85 16 Total: -1.00 -59.46 292.22 3.50 -55.97 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.13 Total: 4.42 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 5.65 Total: 9.66 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -5.15 Total: -90.46 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.09 Total: -21.73 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -59.46 3.50 -55.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267349011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.422 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds