Wall clock time and date at job start Mon Mar 30 2020 01:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47379 * 2 1 4 4 C 1.46900 * 111.00017 * 193.95106 * 3 2 1 5 5 C 1.50703 * 109.47153 * 66.04415 * 4 3 2 6 6 H 1.08001 * 119.99602 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00264 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99885 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47266 * 59.99302 * 9 7 5 11 11 H 1.48493 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46797 * 299.99366 * 9 7 5 13 13 C 1.38484 * 111.00480 * 69.99475 * 3 2 1 14 14 C 1.41117 * 120.29631 * 63.92886 * 13 3 2 15 15 N 1.30349 * 120.41255 * 180.02562 * 14 13 3 16 16 N 1.39872 * 121.03413 * 0.02562 * 15 14 13 17 17 C 1.46497 * 119.72375 * 180.02562 * 16 15 14 18 18 C 1.34766 * 120.55505 * 359.72960 * 16 15 14 19 19 O 1.22149 * 120.21266 * 180.27819 * 18 16 15 20 20 C 1.38304 * 120.30389 * 243.95950 * 13 3 2 21 21 Cl 1.73599 * 120.48873 * 359.94827 * 20 13 3 22 22 H 1.09004 * 109.46631 * 60.00128 * 1 2 3 23 23 H 1.08988 * 109.47334 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47002 * 300.00587 * 1 2 3 25 25 H 1.08996 * 109.46929 * 239.99600 * 2 1 3 26 26 H 1.09004 * 109.46631 * 119.99872 * 2 1 3 27 27 H 1.08994 * 109.47223 * 186.04444 * 4 3 2 28 28 H 1.08998 * 109.47252 * 306.04693 * 4 3 2 29 29 H 0.97001 * 120.00003 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.79694 * 0.04947 * 14 13 3 31 31 H 1.08997 * 109.46824 * 359.97438 * 17 16 15 32 32 H 1.08998 * 109.47388 * 119.99991 * 17 16 15 33 33 H 1.09008 * 109.46946 * 239.99945 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4501 1.4375 -0.3306 5 6 3.6537 0.9852 -1.7537 6 1 2.8054 0.6880 -2.3524 7 6 4.9229 0.9499 -2.2909 8 7 5.9559 1.3114 -1.5617 9 14 5.1752 0.3899 -4.0551 10 1 4.4227 1.2845 -4.9709 11 1 6.6211 0.4429 -4.3893 12 1 4.6822 -1.0026 -4.2077 13 6 1.7683 2.0004 1.2148 14 6 2.3800 1.5245 2.3941 15 7 2.1445 2.1017 3.5388 16 7 1.2843 3.2010 3.6286 17 6 1.0405 3.8281 4.9300 18 6 0.6824 3.6917 2.5272 19 8 -0.0637 4.6551 2.6121 20 6 0.9148 3.0865 1.2834 21 17 0.1475 3.6957 -0.1497 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0275 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8114 2.4598 -0.2191 28 1 4.0028 0.7814 0.3417 29 1 6.8489 1.2868 -1.9398 30 1 3.0478 0.6769 2.3479 31 1 1.6099 3.3046 5.6979 32 1 1.3522 4.8720 4.8943 33 1 -0.0224 3.7741 5.1659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268152747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:04 Heat of formation + Delta-G solvation = 16.980097 kcal Electronic energy + Delta-G solvation = -18991.128909 eV Core-core repulsion = 15886.041217 eV Total energy + Delta-G solvation = -3105.087692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.27802 -39.86679 -38.09496 -37.42441 -35.03761 -34.30613 -32.34774 -31.60093 -29.28542 -27.58527 -25.36732 -24.64766 -24.28826 -21.97185 -19.64563 -18.92709 -18.40341 -17.60506 -17.46192 -16.78340 -16.47221 -15.83783 -15.52528 -15.01616 -14.80570 -14.43706 -14.28172 -14.04163 -13.65238 -13.46706 -13.04500 -12.94974 -12.86415 -12.73612 -12.67371 -12.38043 -12.02778 -11.94788 -11.81653 -11.44253 -11.19316 -10.60231 -10.58245 -9.71575 -9.34125 -8.18736 -6.26938 -0.95624 0.45958 0.71978 1.20514 1.46969 1.49123 1.56078 2.01372 2.41384 2.68675 3.00773 3.17029 3.54674 3.81690 4.11000 4.27982 4.38987 4.40965 4.43762 4.65781 4.70991 4.78332 4.81455 4.93534 5.04022 5.11835 5.28877 5.41033 5.67355 6.02001 6.08726 6.28404 6.50374 6.57406 6.85477 7.42021 8.91820 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023876 B = 0.005892 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.445835 B = 4750.844078 C = 5021.688953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.511 5.511 4 C 0.216 3.784 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.011 3.989 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.160 3.840 14 C 0.063 3.937 15 N -0.202 5.202 16 N -0.411 5.411 17 C 0.093 3.907 18 C 0.506 3.494 19 O -0.557 6.557 20 C -0.121 4.121 21 Cl -0.010 7.010 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.000 1.000 28 H 0.000 1.000 29 H 0.264 0.736 30 H 0.217 0.783 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -2.176 9.972 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 N -0.234 5.234 4 C 0.093 3.907 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.188 4.188 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.057 3.943 14 C -0.137 4.137 15 N -0.016 5.016 16 N -0.231 5.231 17 C -0.047 4.047 18 C 0.301 3.699 19 O -0.437 6.437 20 C -0.160 4.160 21 Cl 0.020 6.980 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.807 -1.282 10.532 13.789 hybrid contribution 0.662 -0.168 -1.422 1.578 sum -8.145 -1.451 9.110 12.306 Atomic orbital electron populations 1.21747 0.94094 1.02457 1.01318 1.22210 0.96022 0.85795 1.02623 1.59450 1.20910 1.19152 1.23845 1.19479 0.79678 0.95297 0.96246 1.21304 0.92876 1.43839 0.97721 0.91363 1.25732 0.95684 0.95484 1.01895 1.70040 0.99424 1.49003 1.38493 0.85542 0.76701 0.79264 0.79756 1.20121 1.21349 1.18780 1.20134 0.90396 0.92081 0.91675 1.24978 0.99852 1.01166 0.87712 1.75194 1.04714 0.97257 1.24461 1.49866 1.37611 1.25309 1.10301 1.22173 1.04035 0.98524 0.79939 1.16926 0.82924 0.85432 0.84602 1.90983 1.38774 1.28011 1.85925 1.22601 1.03657 0.99326 0.90464 1.98354 1.78933 1.86383 1.34368 0.92759 0.89813 0.94276 0.89419 0.93059 0.98152 0.98262 0.92676 0.76660 0.86004 0.89889 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.94 71.98 0.72 -3.02 16 2 C 0.06 1.85 5.44 86.31 0.47 2.32 16 3 N -0.51 -19.40 3.85 -699.13 -2.69 -22.09 16 4 C 0.22 10.06 4.30 85.56 0.37 10.43 16 5 C -0.52 -26.47 8.31 25.60 0.21 -26.26 16 6 H 0.07 3.41 7.23 -2.91 -0.02 3.39 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -51.95 13.29 21.44 0.28 -51.67 16 9 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.16 5.54 3.71 38.81 0.14 5.68 16 14 C 0.06 1.84 9.82 85.62 0.84 2.68 16 15 N -0.20 -5.58 11.50 -56.44 -0.65 -6.22 16 16 N -0.41 -11.79 3.91 -494.62 -1.93 -13.72 16 17 C 0.09 1.80 10.35 127.77 1.32 3.13 16 18 C 0.51 17.71 7.48 84.74 0.63 18.34 16 19 O -0.56 -21.62 16.62 -5.80 -0.10 -21.72 16 20 C -0.12 -4.39 6.39 22.78 0.15 -4.25 16 21 Cl -0.01 -0.35 28.08 -2.72 -0.08 -0.43 16 22 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.04 1.06 7.52 -2.38 -0.02 1.05 16 25 H 0.09 3.05 6.60 -2.39 -0.02 3.03 16 26 H 0.05 1.41 7.07 -2.38 -0.02 1.39 16 27 H 0.00 0.02 8.05 -2.39 -0.02 0.00 16 28 H 0.00 -0.02 7.48 -2.39 -0.02 -0.03 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.22 5.34 7.18 -2.91 -0.02 5.32 16 31 H 0.12 1.68 8.09 -2.39 -0.02 1.66 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -62.74 299.41 3.30 -59.44 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.12 Total: 2.66 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.31 Total: 10.09 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -4.99 Total: -93.71 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.10 Total: -21.72 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -62.74 3.30 -59.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268152747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.422 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds