Wall clock time and date at job start Mon Mar 30 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47299 * 2 1 4 4 N 1.30412 * 125.97242 * 269.99827 * 3 2 1 5 5 N 1.39913 * 108.97754 * 180.02562 * 4 3 2 6 6 C 1.46504 * 125.74646 * 179.97438 * 5 4 3 7 7 C 1.34378 * 108.51010 * 359.97438 * 5 4 3 8 8 Cl 1.73599 * 126.32728 * 179.97438 * 7 5 4 9 9 C 1.38339 * 107.34338 * 0.02562 * 7 5 4 10 10 C 1.47236 * 126.44160 * 179.73342 * 9 7 5 11 11 O 1.21645 * 119.99418 * 90.02142 * 10 9 7 12 12 N 1.34776 * 120.00163 * 270.02504 * 10 9 7 13 13 C 1.46502 * 119.99983 * 0.02562 * 12 10 9 14 14 C 1.36992 * 120.00025 * 179.97438 * 12 10 9 15 15 H 1.08001 * 119.99747 * 22.46273 * 14 12 10 16 16 C 1.38966 * 119.99779 * 202.46089 * 14 12 10 17 17 N 1.31417 * 120.00066 * 11.57685 * 16 14 12 18 18 Si 1.86801 * 119.99823 * 191.57115 * 16 14 12 19 19 H 1.48508 * 109.46843 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47043 * 119.99982 * 18 16 14 21 21 H 1.48498 * 109.47085 * 240.00293 * 18 16 14 22 22 H 1.09007 * 109.47282 * 300.00734 * 1 2 3 23 23 H 1.09001 * 109.47050 * 59.99934 * 1 2 3 24 24 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46825 * 239.99437 * 2 1 3 26 26 H 1.09002 * 109.46500 * 119.99539 * 2 1 3 27 27 H 1.08994 * 109.47036 * 269.99545 * 6 5 4 28 28 H 1.08997 * 109.47346 * 29.99730 * 6 5 4 29 29 H 1.09004 * 109.47001 * 150.00097 * 6 5 4 30 30 H 1.09001 * 109.47092 * 92.21291 * 13 12 10 31 31 H 1.08994 * 109.46895 * 212.21616 * 13 12 10 32 32 H 1.09006 * 109.46985 * 332.21677 * 13 12 10 33 33 H 0.97003 * 119.99428 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2878 2.1430 -1.0554 5 7 2.7344 3.4043 -0.6465 6 6 3.1238 4.5034 -1.5334 7 6 2.7460 3.4379 0.6968 8 17 3.2222 4.7813 1.6879 9 6 2.3094 2.2037 1.1440 10 6 2.1661 1.7826 2.5475 11 8 1.1140 1.9610 3.1316 12 7 3.2004 1.1995 3.1852 13 6 4.4676 0.9852 2.4819 14 6 3.0672 0.8082 4.4913 15 1 2.0857 0.6223 4.9018 16 6 4.1950 0.6505 5.2878 17 7 5.3611 1.0893 4.8700 18 14 4.0532 -0.1852 6.9524 19 1 2.6424 -0.5853 7.1869 20 1 4.9197 -1.3910 6.9764 21 1 4.4848 0.7558 8.0170 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 4.1890 4.4329 -1.7531 28 1 2.5563 4.4395 -2.4619 29 1 2.9157 5.4554 -1.0451 30 1 5.1256 1.8377 2.6508 31 1 4.9430 0.0792 2.8578 32 1 4.2770 0.8793 1.4139 33 1 6.1483 0.9788 5.4259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271209252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:05 Heat of formation + Delta-G solvation = 21.209074 kcal Electronic energy + Delta-G solvation = -19204.232769 eV Core-core repulsion = 16099.328458 eV Total energy + Delta-G solvation = -3104.904310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.50708 -39.92040 -38.05508 -36.60617 -35.74350 -33.63097 -32.76341 -31.19575 -28.43777 -27.78986 -26.38758 -24.68297 -23.20958 -21.40232 -20.42980 -18.94574 -18.41223 -17.45301 -16.80986 -16.51795 -16.34030 -15.88299 -15.44320 -15.08390 -14.54588 -14.51515 -14.04804 -13.67079 -13.59879 -13.44961 -13.29025 -13.07902 -12.78101 -12.71265 -12.65208 -12.48932 -12.36264 -12.15267 -12.08097 -11.64299 -11.02309 -10.55509 -10.28765 -9.69525 -9.56555 -8.30894 -5.95932 0.24579 0.37208 1.28173 1.38045 1.44593 1.56681 1.59901 1.92925 2.31524 3.03125 3.12110 3.40340 3.75774 4.13823 4.18632 4.33348 4.35723 4.40278 4.51030 4.59315 4.60686 4.65085 4.99020 5.01879 5.08882 5.26453 5.33240 5.36618 5.48455 5.59683 6.11206 6.36772 6.49949 7.17027 7.45237 8.04316 8.71699 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.007150 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.125764 B = 3915.071688 C = 4656.474002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 C 0.108 3.892 4 N -0.277 5.277 5 N -0.351 5.351 6 C 0.083 3.917 7 C 0.142 3.858 8 Cl 0.013 6.987 9 C -0.248 4.248 10 C 0.520 3.480 11 O -0.626 6.626 12 N -0.442 5.442 13 C 0.137 3.863 14 C -0.341 4.341 15 H 0.076 0.924 16 C 0.000 4.000 17 N -0.894 5.894 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.265 1.265 21 H -0.276 1.276 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 3.086 -12.868 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.058 4.058 4 N -0.100 5.100 5 N -0.134 5.134 6 C -0.055 4.055 7 C -0.015 4.015 8 Cl 0.041 6.959 9 C -0.264 4.264 10 C 0.308 3.692 11 O -0.513 6.513 12 N -0.158 5.158 13 C -0.007 4.007 14 C -0.469 4.469 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.533 5.533 18 Si 0.814 3.186 19 H -0.196 1.196 20 H -0.190 1.190 21 H -0.202 1.202 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.331 3.463 -13.799 14.230 hybrid contribution 0.257 0.199 1.999 2.025 sum -0.074 3.661 -11.800 12.355 Atomic orbital electron populations 1.21642 0.93063 1.03303 1.01445 1.20121 0.97279 0.86808 1.04178 1.22572 0.97259 0.97961 0.87997 1.77058 1.21872 0.89987 1.21120 1.48638 1.50036 1.12554 1.02144 1.22461 1.03491 0.85122 0.94454 1.21913 1.03096 0.91604 0.84922 1.98409 1.89758 1.41719 1.65999 1.19952 1.16539 0.94787 0.95162 1.17326 0.84790 0.81591 0.85463 1.90559 1.30237 1.61247 1.69298 1.43662 1.11344 1.49927 1.10911 1.21239 0.85162 1.01553 0.92705 1.19688 0.94630 1.45199 0.87397 0.90573 1.26110 0.94406 0.96970 1.02708 1.70101 1.00021 1.43615 1.39527 0.84916 0.78530 0.78136 0.77004 1.19590 1.18977 1.20197 0.94954 0.91650 0.89342 0.87187 0.91156 0.88099 0.86446 0.87897 0.93901 0.92338 0.93642 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.89 71.98 0.71 -3.21 16 2 C -0.04 -1.40 6.33 29.85 0.19 -1.21 16 3 C 0.11 3.97 6.20 43.54 0.27 4.24 16 4 N -0.28 -9.15 12.49 -46.65 -0.58 -9.73 16 5 N -0.35 -10.65 3.98 -357.33 -1.42 -12.07 16 6 C 0.08 1.48 11.28 127.77 1.44 2.92 16 7 C 0.14 5.29 7.54 84.33 0.64 5.92 16 8 Cl 0.01 0.46 28.57 -2.72 -0.08 0.38 16 9 C -0.25 -10.76 4.08 -20.12 -0.08 -10.84 16 10 C 0.52 27.52 7.01 86.61 0.61 28.13 16 11 O -0.63 -37.87 16.80 -4.17 -0.07 -37.94 16 12 N -0.44 -23.86 3.02 -662.82 -2.00 -25.85 16 13 C 0.14 6.53 8.54 127.77 1.09 7.62 16 14 C -0.34 -19.71 9.29 84.06 0.78 -18.93 16 15 H 0.08 4.67 7.40 -2.91 -0.02 4.65 16 16 C 0.00 0.00 5.11 84.93 0.43 0.44 16 17 N -0.89 -47.71 10.61 21.67 0.23 -47.48 16 18 Si 0.99 42.56 29.57 68.60 2.03 44.59 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.07 2.44 8.00 -2.39 -0.02 2.43 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.10 1.55 7.78 -2.38 -0.02 1.53 16 30 H 0.04 2.13 7.53 -2.39 -0.02 2.11 16 31 H 0.06 2.86 7.07 -2.39 -0.02 2.84 16 32 H 0.05 1.93 6.55 -2.38 -0.02 1.91 16 33 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -71.49 303.11 5.31 -66.18 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.12 Total: 6.85 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.08 Total: 15.09 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -3.77 Total: -95.14 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.07 Total: -37.94 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -0.08 Total: 0.38 kcal Total: -71.49 5.31 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271209252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.386 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds