Wall clock time and date at job start Mon Mar 30 2020 01:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47265 * 2 1 4 4 H 1.08995 * 109.47539 * 302.84983 * 3 2 1 5 5 C 1.50707 * 109.47342 * 182.84735 * 3 2 1 6 6 H 1.07994 * 120.00478 * 245.68444 * 5 3 2 7 7 C 1.37881 * 119.99427 * 65.68226 * 5 3 2 8 8 N 1.31513 * 119.99653 * 193.19810 * 7 5 3 9 9 Si 1.86807 * 120.00170 * 13.19416 * 7 5 3 10 10 H 1.48496 * 109.46696 * 86.01810 * 9 7 5 11 11 H 1.48494 * 109.47110 * 206.01747 * 9 7 5 12 12 H 1.48495 * 109.46998 * 326.01937 * 9 7 5 13 13 N 1.46505 * 109.47007 * 62.85354 * 3 2 1 14 14 C 1.38481 * 119.99646 * 208.56059 * 13 3 2 15 15 C 1.41113 * 120.30325 * 354.51142 * 14 13 3 16 16 N 1.30360 * 120.41149 * 180.02562 * 15 14 13 17 17 N 1.39871 * 121.02933 * 359.77032 * 16 15 14 18 18 C 1.46507 * 119.71704 * 180.26266 * 17 16 15 19 19 C 1.34760 * 120.56100 * 0.51531 * 17 16 15 20 20 O 1.22151 * 120.20830 * 179.74653 * 19 17 16 21 21 C 1.38309 * 120.29522 * 174.53531 * 14 13 3 22 22 Cl 1.73600 * 120.49341 * 359.97438 * 21 14 13 23 23 H 1.08998 * 109.47394 * 304.92526 * 1 2 3 24 24 H 1.09002 * 109.47014 * 64.91869 * 1 2 3 25 25 H 1.08997 * 109.47563 * 184.91642 * 1 2 3 26 26 H 1.09001 * 109.47121 * 240.00472 * 2 1 3 27 27 H 1.09002 * 109.47060 * 119.99977 * 2 1 3 28 28 H 0.97000 * 119.99798 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00098 * 28.55963 * 13 3 2 30 30 H 1.07995 * 119.79701 * 0.02562 * 15 14 13 31 31 H 1.09004 * 109.46905 * 270.24873 * 18 17 16 32 32 H 1.08998 * 109.46936 * 30.25194 * 18 17 16 33 33 H 1.08998 * 109.46576 * 150.25176 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6356 1.9709 -0.8633 5 6 3.5454 1.4431 -0.0706 6 1 4.1249 1.8142 0.7617 7 6 4.1828 0.9697 -1.1979 8 7 5.4747 0.7255 -1.1690 9 14 3.2112 0.6751 -2.7660 10 1 3.1296 1.9383 -3.5423 11 1 3.8902 -0.3639 -3.5811 12 1 1.8416 0.2168 -2.4209 13 7 1.6086 2.1130 1.2291 14 6 1.4058 3.4828 1.2359 15 6 1.7227 4.2552 0.0982 16 7 1.5331 5.5449 0.1025 17 7 1.0094 6.1930 1.2259 18 6 0.8027 7.6431 1.1973 19 6 0.6981 5.4955 2.3362 20 8 0.2454 6.0687 3.3153 21 6 0.8912 4.1064 2.3581 22 17 0.4915 3.1837 3.7732 23 1 -0.3634 0.5883 0.8425 24 1 -0.3633 0.4356 -0.9308 25 1 -0.3634 -1.0238 0.0881 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9231 0.3921 -1.9620 29 1 1.4650 1.5974 2.0381 30 1 2.1248 3.7748 -0.7815 31 1 1.7045 8.1456 1.5472 32 1 0.5834 7.9587 0.1773 33 1 -0.0335 7.9037 1.8461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273880167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:59 Heat of formation + Delta-G solvation = 3.482749 kcal Electronic energy + Delta-G solvation = -18951.751856 eV Core-core repulsion = 15846.078875 eV Total energy + Delta-G solvation = -3105.672981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93506 -39.44221 -37.94173 -37.36622 -35.43295 -34.17064 -33.19732 -31.34745 -29.26057 -27.95011 -25.38923 -24.77547 -23.48966 -22.04499 -19.42840 -19.00822 -18.67896 -18.32400 -17.16176 -16.80578 -16.55247 -15.91881 -15.32745 -15.03925 -14.73192 -14.62153 -14.28935 -14.07093 -13.70941 -13.54868 -13.41193 -13.02343 -12.87756 -12.61173 -12.37352 -12.32161 -12.01906 -11.88556 -11.71252 -11.24153 -11.12522 -10.97937 -10.60775 -9.82675 -8.78925 -8.29577 -6.36424 -0.52630 0.80608 0.97350 1.39064 1.43749 1.48167 1.54129 2.22289 2.34412 2.37535 3.03833 3.18034 3.69224 3.76663 4.28539 4.32775 4.43047 4.50757 4.51839 4.58491 4.74355 4.78848 4.84784 5.02520 5.05701 5.20436 5.28883 5.41404 5.59885 5.84277 6.29966 6.41626 6.58729 6.71684 6.88170 7.29806 8.86120 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.006738 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.370047 B = 4154.330189 C = 4828.258625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.239 3.761 4 H 0.061 0.939 5 C -0.544 4.544 6 H 0.034 0.966 7 C 0.032 3.968 8 N -0.935 5.935 9 Si 0.912 3.088 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.210 1.210 13 N -0.660 5.660 14 C 0.280 3.720 15 C 0.080 3.920 16 N -0.193 5.193 17 N -0.433 5.433 18 C 0.095 3.905 19 C 0.527 3.473 20 O -0.582 6.582 21 C -0.290 4.290 22 Cl -0.041 7.041 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.268 0.732 29 H 0.408 0.592 30 H 0.215 0.785 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 4.345 -1.232 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.136 3.864 4 H 0.078 0.922 5 C -0.582 4.582 6 H 0.052 0.948 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.735 3.265 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.132 1.132 13 N -0.278 5.278 14 C 0.154 3.846 15 C -0.123 4.123 16 N -0.006 5.006 17 N -0.254 5.254 18 C -0.045 4.045 19 C 0.326 3.674 20 O -0.465 6.465 21 C -0.337 4.337 22 Cl -0.013 7.013 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.245 0.755 30 H 0.232 0.768 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.996 5.267 -1.372 12.269 hybrid contribution 0.425 -1.280 0.528 1.449 sum -10.571 3.987 -0.844 11.329 Atomic orbital electron populations 1.21826 0.94757 1.02191 1.01956 1.22203 0.96008 0.96718 1.02721 1.19320 0.92872 0.91157 0.83055 0.92177 1.21382 0.90704 1.43462 1.02648 0.94762 1.25700 0.95414 0.93592 1.02135 1.70087 1.11934 1.44635 1.30617 0.86460 0.81837 0.79032 0.79215 1.18730 1.22189 1.13203 1.45256 1.64344 1.03067 1.15168 1.18778 0.87299 0.86518 0.91967 1.24210 0.99990 0.88819 0.99235 1.75098 1.07115 1.10262 1.08156 1.49590 1.56150 1.10521 1.09144 1.22020 1.03471 0.73450 1.05569 1.16562 0.80135 0.87278 0.83390 1.90912 1.49968 1.71716 1.33869 1.20902 1.27300 0.92493 0.92983 1.98269 1.93090 1.71382 1.38543 0.92729 0.92399 0.91654 0.90989 0.92236 0.92334 0.75452 0.76839 0.90438 0.87080 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.85 71.98 0.71 -3.07 16 2 C -0.14 -4.43 4.86 30.59 0.15 -4.28 16 3 C 0.24 8.51 1.23 44.25 0.05 8.56 16 4 H 0.06 1.97 5.26 -2.39 -0.01 1.96 16 5 C -0.54 -25.47 9.14 25.60 0.23 -25.23 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C 0.03 1.57 5.37 84.66 0.45 2.02 16 8 N -0.93 -51.94 13.96 21.45 0.30 -51.64 16 9 Si 0.91 34.83 25.87 68.60 1.77 36.61 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.30 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.21 -6.69 5.31 99.48 0.53 -6.16 16 13 N -0.66 -21.88 4.39 -322.11 -1.41 -23.29 16 14 C 0.28 9.34 6.66 38.81 0.26 9.60 16 15 C 0.08 2.50 10.42 85.62 0.89 3.39 16 16 N -0.19 -5.87 11.53 -56.44 -0.65 -6.52 16 17 N -0.43 -13.51 3.91 -494.61 -1.93 -15.44 16 18 C 0.09 2.14 10.72 127.77 1.37 3.51 16 19 C 0.53 19.38 7.48 84.74 0.63 20.01 16 20 O -0.58 -23.95 16.19 -5.81 -0.09 -24.04 16 21 C -0.29 -10.31 6.39 22.78 0.15 -10.16 16 22 Cl -0.04 -1.37 27.26 -2.72 -0.07 -1.45 16 23 H 0.05 1.34 7.55 -2.39 -0.02 1.33 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 2.41 4.69 -2.39 -0.01 2.40 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.41 12.99 7.35 -92.71 -0.68 12.31 16 30 H 0.22 6.29 6.27 -2.91 -0.02 6.27 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.05 7.40 -2.39 -0.02 2.03 16 Total: -1.00 -61.29 290.34 3.10 -58.19 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.29 Total: 23.24 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.90 Total: 4.35 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -3.70 Total: -96.90 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.09 Total: -24.04 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 1.77 Total: 36.61 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.45 kcal Total: -61.29 3.10 -58.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273880167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -61.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds