Wall clock time and date at job start Mon Mar 30 2020 01:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47088 * 2 1 4 4 H 1.09002 * 109.47067 * 54.72543 * 3 2 1 5 5 C 1.50701 * 109.47024 * 174.73007 * 3 2 1 6 6 H 1.07992 * 120.00174 * 120.00236 * 5 3 2 7 7 C 1.37880 * 119.99629 * 299.99345 * 5 3 2 8 8 N 1.31520 * 119.99652 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00381 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47264 * 89.99548 * 9 7 5 11 11 H 1.48499 * 109.47095 * 209.99695 * 9 7 5 12 12 H 1.48503 * 109.46950 * 329.99649 * 9 7 5 13 13 N 1.46501 * 109.46723 * 294.72571 * 3 2 1 14 14 C 1.38483 * 119.99512 * 158.00381 * 13 3 2 15 15 C 1.41118 * 120.30385 * 354.69104 * 14 13 3 16 16 N 1.30349 * 120.41028 * 179.72011 * 15 14 13 17 17 N 1.39867 * 121.03632 * 0.54317 * 16 15 14 18 18 C 1.46497 * 119.72345 * 179.71993 * 17 16 15 19 19 C 1.34769 * 120.55625 * 359.73946 * 17 16 15 20 20 O 1.22147 * 120.20847 * 179.97438 * 19 17 16 21 21 C 1.38308 * 120.29946 * 174.97015 * 14 13 3 22 22 Cl 1.73601 * 120.48700 * 0.02562 * 21 14 13 23 23 H 1.09003 * 109.46954 * 185.07056 * 1 2 3 24 24 H 1.09001 * 109.47239 * 305.06691 * 1 2 3 25 25 H 1.08998 * 109.46989 * 65.07099 * 1 2 3 26 26 H 1.08990 * 109.47683 * 239.99664 * 2 1 3 27 27 H 1.09004 * 109.46967 * 119.99673 * 2 1 3 28 28 H 0.97002 * 119.99834 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00140 * 338.00050 * 13 3 2 30 30 H 1.08001 * 119.79208 * 359.97438 * 15 14 13 31 31 H 1.08999 * 109.47280 * 270.01801 * 18 17 16 32 32 H 1.09000 * 109.46963 * 30.02106 * 18 17 16 33 33 H 1.09000 * 109.47261 * 150.01969 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6015 1.9829 0.8390 5 6 3.5413 1.4446 0.1305 6 1 4.1501 1.8879 -0.6435 7 6 4.1377 0.8805 1.2383 8 7 5.4479 0.8826 1.3524 9 14 3.0849 0.1132 2.5770 10 1 2.8653 -1.3234 2.2717 11 1 3.7763 0.2412 3.8849 12 1 1.7759 0.8118 2.6386 13 7 1.6580 2.0955 -1.2546 14 6 1.5885 3.4769 -1.3230 15 6 1.7744 4.2575 -0.1622 16 7 1.7148 5.5581 -0.2252 17 7 1.4553 6.2103 -1.4349 18 6 1.3886 7.6733 -1.4716 19 6 1.2659 5.5043 -2.5671 20 8 1.0393 6.0804 -3.6201 21 6 1.3304 4.1037 -2.5285 22 17 1.0893 3.1707 -3.9725 23 1 -0.3633 -1.0237 0.0908 24 1 -0.3634 0.5904 0.8411 25 1 -0.3633 0.4331 -0.9319 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5138 0.8900 28 1 5.8675 0.4855 2.1316 29 1 1.4539 1.5602 -2.0374 30 1 1.9714 3.7744 0.7835 31 1 0.3638 7.9951 -1.2864 32 1 2.0434 8.0862 -0.7043 33 1 1.7089 8.0272 -2.4515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273880170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:01 Heat of formation + Delta-G solvation = 4.684081 kcal Electronic energy + Delta-G solvation = -18951.377577 eV Core-core repulsion = 15845.756690 eV Total energy + Delta-G solvation = -3105.620888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.92722 -39.45902 -37.94627 -37.38411 -35.47543 -34.18096 -33.23161 -31.35444 -29.26415 -27.95690 -25.39325 -24.78682 -23.50852 -22.18055 -19.43620 -18.96707 -18.70008 -18.35568 -17.14779 -16.85962 -16.56557 -16.03963 -15.33639 -15.09887 -14.76425 -14.55906 -14.29935 -14.04469 -13.67720 -13.63040 -13.41262 -13.10465 -12.95517 -12.58296 -12.34328 -12.33039 -12.02888 -11.89316 -11.68832 -11.31013 -11.10955 -10.99318 -10.72276 -9.81756 -8.78869 -8.30123 -6.40249 -0.51315 0.81989 0.97905 1.38501 1.39707 1.43106 1.53262 2.19591 2.32169 2.37297 3.03312 3.18717 3.68950 3.77204 4.21375 4.24836 4.41216 4.44545 4.52406 4.56875 4.77615 4.79123 4.83572 4.98650 5.04174 5.12562 5.23078 5.35143 5.53595 5.82917 6.26248 6.42892 6.59672 6.69025 6.88736 7.26752 8.85723 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.006596 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.685844 B = 4243.901105 C = 4847.696588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.236 3.764 4 H 0.066 0.934 5 C -0.539 4.539 6 H 0.034 0.966 7 C 0.026 3.974 8 N -0.939 5.939 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.224 1.224 13 N -0.660 5.660 14 C 0.282 3.718 15 C 0.082 3.918 16 N -0.194 5.194 17 N -0.433 5.433 18 C 0.095 3.905 19 C 0.527 3.473 20 O -0.583 6.583 21 C -0.291 4.291 22 Cl -0.042 7.042 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.268 0.732 29 H 0.408 0.592 30 H 0.218 0.782 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 3.689 0.428 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.133 3.867 4 H 0.083 0.917 5 C -0.577 4.577 6 H 0.053 0.947 7 C -0.174 4.174 8 N -0.578 5.578 9 Si 0.763 3.237 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.146 1.146 13 N -0.279 5.279 14 C 0.157 3.843 15 C -0.121 4.121 16 N -0.007 5.007 17 N -0.254 5.254 18 C -0.045 4.045 19 C 0.326 3.674 20 O -0.466 6.466 21 C -0.338 4.338 22 Cl -0.014 7.014 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.246 0.754 30 H 0.234 0.766 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.300 4.649 0.520 12.230 hybrid contribution 0.381 -1.545 -0.574 1.691 sum -10.919 3.104 -0.055 11.352 Atomic orbital electron populations 1.21844 0.94013 1.02540 1.02414 1.22135 0.96762 0.96824 1.02239 1.19451 0.93312 0.91266 0.82683 0.91662 1.21454 0.91022 1.39090 1.06129 0.94738 1.25752 0.95734 0.95641 1.00256 1.70039 1.11334 1.45794 1.30605 0.86033 0.80389 0.79881 0.77366 1.19342 1.23076 1.14624 1.45216 1.65238 1.01831 1.15655 1.18767 0.87031 0.86548 0.91972 1.24222 0.99698 0.88593 0.99550 1.75084 1.09039 1.10425 1.06171 1.49584 1.62810 1.09505 1.03550 1.22011 1.04542 0.73071 1.04875 1.16567 0.79284 0.87451 0.84105 1.90908 1.54367 1.72066 1.29214 1.20903 1.32421 0.91718 0.88742 1.98267 1.96068 1.70809 1.36211 0.91438 0.92109 0.92102 0.91453 0.92357 0.92278 0.75407 0.76594 0.89665 0.87485 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.74 71.98 0.70 -2.93 16 2 C -0.14 -4.49 4.95 30.60 0.15 -4.34 16 3 C 0.24 8.39 1.28 44.25 0.06 8.45 16 4 H 0.07 2.14 5.49 -2.39 -0.01 2.12 16 5 C -0.54 -25.55 9.29 25.60 0.24 -25.31 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.03 1.29 5.45 84.65 0.46 1.75 16 8 N -0.94 -52.86 13.96 21.45 0.30 -52.56 16 9 Si 0.94 36.67 24.41 68.60 1.67 38.34 16 10 H -0.27 -10.11 6.83 99.48 0.68 -9.44 16 11 H -0.30 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.22 -7.30 6.53 99.48 0.65 -6.65 16 13 N -0.66 -21.75 4.73 -322.10 -1.52 -23.27 16 14 C 0.28 9.50 6.60 38.82 0.26 9.76 16 15 C 0.08 2.57 10.46 85.62 0.90 3.46 16 16 N -0.19 -5.97 11.53 -56.44 -0.65 -6.62 16 17 N -0.43 -13.78 3.91 -494.63 -1.93 -15.71 16 18 C 0.09 2.19 10.72 127.77 1.37 3.56 16 19 C 0.53 19.72 7.48 84.73 0.63 20.35 16 20 O -0.58 -24.38 16.19 -5.80 -0.09 -24.47 16 21 C -0.29 -10.53 6.39 22.78 0.15 -10.38 16 22 Cl -0.04 -1.42 27.26 -2.72 -0.07 -1.50 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.37 7.90 -2.39 -0.02 1.35 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.98 3.21 -2.39 -0.01 1.98 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.41 12.67 7.29 -92.71 -0.68 11.99 16 30 H 0.22 6.19 6.24 -2.91 -0.02 6.17 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.07 7.41 -2.39 -0.02 2.05 16 Total: -1.00 -62.73 289.42 3.00 -59.73 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.39 Total: 21.69 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.91 Total: 4.37 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.81 Total: -98.17 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.09 Total: -24.47 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 1.67 Total: 38.34 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal Total: -62.73 3.00 -59.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273880170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.414 kcal (2) G-P(sol) polarization free energy of solvation -62.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds