Wall clock time and date at job start Mon Mar 30 2020 00:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48512 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47264 * 299.99274 * 3 2 1 6 6 H 1.48501 * 109.47557 * 60.00031 * 3 2 1 7 7 C 1.37881 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47337 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47407 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47397 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99877 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46866 * 179.97438 * 13 12 11 15 15 C 1.38223 * 119.98609 * 270.02319 * 14 13 12 16 16 C 1.38448 * 120.00602 * 179.97438 * 15 14 13 17 17 F 1.35092 * 120.01790 * 180.02562 * 16 15 14 18 18 C 1.38461 * 119.95789 * 0.02562 * 16 15 14 19 19 C 1.38295 * 119.96188 * 359.97438 * 18 16 15 20 20 Cl 1.73607 * 119.99771 * 179.97438 * 19 18 16 21 21 C 1.38214 * 119.97949 * 90.00283 * 14 13 12 22 22 H 0.97001 * 120.00101 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47022 * 59.99697 * 9 7 2 24 24 H 1.09000 * 109.46712 * 299.99513 * 9 7 2 25 25 H 1.09002 * 109.46948 * 59.99550 * 10 9 7 26 26 H 1.09004 * 109.46974 * 300.00086 * 10 9 7 27 27 H 1.09002 * 109.47278 * 59.99943 * 11 10 9 28 28 H 1.09004 * 109.47152 * 300.00628 * 11 10 9 29 29 H 1.00906 * 110.99780 * 56.04539 * 12 11 10 30 30 H 1.08994 * 109.46948 * 60.00628 * 13 12 11 31 31 H 1.08998 * 109.47149 * 299.99699 * 13 12 11 32 32 H 1.07999 * 119.99418 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.01269 * 180.24918 * 18 16 15 34 34 H 1.08001 * 119.97514 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1037 0.0006 13 6 1.7346 -7.3950 0.0018 14 6 2.7441 -8.5139 0.0005 15 6 3.2055 -9.0267 -1.1974 16 6 4.1333 -10.0542 -1.1990 17 9 4.5848 -10.5552 -2.3696 18 6 4.5982 -10.5680 -0.0003 19 6 4.1355 -10.0539 1.1973 20 17 4.7172 -10.6979 2.7009 21 6 3.2084 -9.0265 1.1971 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8533 -5.0452 -0.8886 28 1 0.8539 -5.0446 0.8914 29 1 3.0704 -6.0365 0.7815 30 1 1.1088 -7.4698 -0.8875 31 1 1.1107 -7.4691 0.8924 32 1 2.8421 -8.6257 -2.1320 33 1 5.3249 -11.3669 -0.0006 34 1 2.8472 -8.6252 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274989658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:32 Heat of formation + Delta-G solvation = -48.688453 kcal Electronic energy + Delta-G solvation = -17116.474212 eV Core-core repulsion = 13988.618956 eV Total energy + Delta-G solvation = -3127.855256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.22569 -39.69037 -37.05674 -36.28117 -33.75566 -32.18087 -30.80577 -30.41487 -26.95249 -24.86755 -23.15252 -22.37719 -21.72983 -20.15285 -17.74544 -17.04619 -16.58849 -16.31377 -15.96413 -15.61061 -14.96660 -14.70809 -14.36070 -14.19310 -13.88288 -13.43432 -13.29413 -12.59284 -12.35554 -12.15079 -11.80122 -11.61264 -11.48966 -11.40593 -11.26600 -10.86807 -10.61233 -10.49346 -9.72776 -9.45321 -9.20936 -9.04935 -9.04046 -8.35575 -8.30443 -6.00307 -4.02301 0.65598 0.69644 1.65319 3.04763 3.31268 3.38755 3.43317 3.85725 4.18376 4.44543 4.54262 4.57267 4.62580 4.85732 4.98690 5.20976 5.35773 5.40774 5.58500 5.65557 5.69324 5.74774 5.82215 6.08515 6.26320 6.37142 6.66178 6.69485 7.10364 7.20188 7.48572 7.67684 7.81711 8.00010 8.43245 9.05149 9.61915 11.11188 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002770 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.602386 B =10107.603568 C =10522.292904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.686 5.686 13 C 0.093 3.907 14 C -0.034 4.034 15 C -0.127 4.127 16 C 0.112 3.888 17 F -0.133 7.133 18 C -0.152 4.152 19 C -0.007 4.007 20 Cl -0.060 7.060 21 C -0.116 4.116 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.340 0.660 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -23.477 1.804 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.317 5.317 13 C -0.035 4.035 14 C -0.035 4.035 15 C -0.146 4.146 16 C 0.093 3.907 17 F -0.111 7.111 18 C -0.171 4.171 19 C -0.034 4.034 20 Cl -0.031 7.031 21 C -0.135 4.135 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.158 0.842 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.418 -23.417 1.208 24.310 hybrid contribution 0.273 0.733 0.845 1.151 sum 6.691 -22.684 2.053 23.739 Atomic orbital electron populations 1.69972 1.06068 1.26475 1.51101 1.25032 0.94853 0.99299 0.95371 0.86540 0.80163 0.83777 0.77556 1.19702 1.21008 1.21051 1.21295 0.93114 0.91033 1.50247 0.92599 1.19069 0.93999 0.91367 0.97143 1.21632 0.99227 0.92834 1.00852 1.22177 0.94043 0.90553 1.00186 1.60633 1.20309 1.00549 1.50193 1.20941 0.93179 0.87245 1.02173 1.19673 0.96669 0.95761 0.91371 1.21189 0.97403 0.95917 1.00092 1.17430 0.96809 0.95535 0.80966 1.91531 1.87755 1.86328 1.45531 1.20932 1.03239 1.03053 0.89911 1.20529 0.98456 0.97371 0.87066 1.98392 1.87732 1.85643 1.31284 1.21064 0.97153 0.96067 0.99209 0.93080 0.96549 0.96777 0.93584 0.92465 0.91222 0.95455 0.84210 0.89505 0.93718 0.83707 0.83810 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 11 C 0.06 0.95 5.68 -3.83 -0.02 0.93 16 12 N -0.69 -9.18 6.49 -115.06 -0.75 -9.93 16 13 C 0.09 0.99 5.81 -4.97 -0.03 0.96 16 14 C -0.03 -0.33 5.39 -104.64 -0.56 -0.90 16 15 C -0.13 -1.26 9.68 -39.51 -0.38 -1.64 16 16 C 0.11 1.12 7.30 -39.42 -0.29 0.84 16 17 F -0.13 -1.41 17.27 2.25 0.04 -1.38 16 18 C -0.15 -1.39 9.81 -39.48 -0.39 -1.77 16 19 C -0.01 -0.07 6.32 -39.51 -0.25 -0.32 16 20 Cl -0.06 -0.52 28.96 -51.86 -1.50 -2.02 16 21 C -0.12 -1.07 9.48 -39.54 -0.37 -1.45 16 22 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.34 4.34 8.72 -39.29 -0.34 3.99 16 30 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -29.74 315.26 -9.26 -39.00 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.53 Total: -2.10 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.99 Total: -18.78 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.01 Total: -36.15 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.74 -9.26 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274989658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.688 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds