Wall clock time and date at job start Mon Mar 30 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48512 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47264 * 299.99274 * 3 2 1 6 6 H 1.48501 * 109.47557 * 60.00031 * 3 2 1 7 7 C 1.37881 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47337 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47407 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47397 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99877 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46866 * 179.97438 * 13 12 11 15 15 C 1.38223 * 119.98609 * 270.02319 * 14 13 12 16 16 C 1.38448 * 120.00602 * 179.97438 * 15 14 13 17 17 F 1.35092 * 120.01790 * 180.02562 * 16 15 14 18 18 C 1.38461 * 119.95789 * 0.02562 * 16 15 14 19 19 C 1.38295 * 119.96188 * 359.97438 * 18 16 15 20 20 Cl 1.73607 * 119.99771 * 179.97438 * 19 18 16 21 21 C 1.38214 * 119.97949 * 90.00283 * 14 13 12 22 22 H 0.97001 * 120.00101 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47022 * 59.99697 * 9 7 2 24 24 H 1.09000 * 109.46712 * 299.99513 * 9 7 2 25 25 H 1.09002 * 109.46948 * 59.99550 * 10 9 7 26 26 H 1.09004 * 109.46974 * 300.00086 * 10 9 7 27 27 H 1.09002 * 109.47278 * 59.99943 * 11 10 9 28 28 H 1.09004 * 109.47152 * 300.00628 * 11 10 9 29 29 H 1.00906 * 110.99780 * 56.04539 * 12 11 10 30 30 H 1.08994 * 109.46948 * 60.00628 * 13 12 11 31 31 H 1.08998 * 109.47149 * 299.99699 * 13 12 11 32 32 H 1.07999 * 119.99418 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.01269 * 180.24918 * 18 16 15 34 34 H 1.08001 * 119.97514 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1037 0.0006 13 6 1.7346 -7.3950 0.0018 14 6 2.7441 -8.5139 0.0005 15 6 3.2055 -9.0267 -1.1974 16 6 4.1333 -10.0542 -1.1990 17 9 4.5848 -10.5552 -2.3696 18 6 4.5982 -10.5680 -0.0003 19 6 4.1355 -10.0539 1.1973 20 17 4.7172 -10.6979 2.7009 21 6 3.2084 -9.0265 1.1971 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8533 -5.0452 -0.8886 28 1 0.8539 -5.0446 0.8914 29 1 3.0704 -6.0365 0.7815 30 1 1.1088 -7.4698 -0.8875 31 1 1.1107 -7.4691 0.8924 32 1 2.8421 -8.6257 -2.1320 33 1 5.3249 -11.3669 -0.0006 34 1 2.8472 -8.6252 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274989658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:31 Heat of formation + Delta-G solvation = -65.195917 kcal Electronic energy + Delta-G solvation = -17117.190029 eV Core-core repulsion = 13988.618956 eV Total energy + Delta-G solvation = -3128.571073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.01081 -40.44599 -37.93057 -37.33399 -35.52979 -33.68113 -31.82678 -31.48069 -28.47871 -26.23401 -23.98540 -23.88651 -22.59452 -21.81679 -18.60452 -18.40211 -17.82369 -17.29926 -16.77745 -16.71183 -16.54413 -15.82747 -15.60590 -15.42043 -14.80810 -14.39108 -14.34755 -14.17314 -13.59717 -13.32563 -13.21966 -12.94098 -12.62494 -12.50609 -12.38240 -12.31210 -12.17457 -12.00479 -11.51129 -11.37144 -11.09424 -10.54669 -10.00773 -9.78690 -9.37191 -8.19537 -6.30020 -0.08204 -0.04581 0.94898 1.40731 1.41173 1.54534 2.28829 2.42023 3.10102 3.13875 3.30683 3.60270 3.84958 3.92765 4.11812 4.19737 4.25209 4.38507 4.50233 4.64305 4.75399 4.82706 4.93083 4.98626 5.02071 5.12986 5.25706 5.32114 5.53883 5.63064 5.77611 5.87976 6.00372 6.28423 6.43556 6.87503 7.39283 8.92484 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002770 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.602386 B =10107.603568 C =10522.292904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.689 5.689 13 C 0.096 3.904 14 C -0.039 4.039 15 C -0.130 4.130 16 C 0.101 3.899 17 F -0.139 7.139 18 C -0.148 4.148 19 C -0.013 4.013 20 Cl -0.054 7.054 21 C -0.112 4.112 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.007 1.007 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.345 0.655 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -23.922 2.253 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.320 5.320 13 C -0.032 4.032 14 C -0.040 4.040 15 C -0.150 4.150 16 C 0.081 3.919 17 F -0.118 7.118 18 C -0.167 4.167 19 C -0.040 4.040 20 Cl -0.025 7.025 21 C -0.132 4.132 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.164 0.836 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.453 -23.884 1.660 25.075 hybrid contribution -0.048 0.809 0.721 1.084 sum 7.406 -23.075 2.381 24.351 Atomic orbital electron populations 1.70093 1.07742 1.27683 1.51877 1.25973 0.95783 1.03337 0.94808 0.85414 0.79091 0.78849 0.77790 1.18659 1.20393 1.20326 1.21748 0.93536 0.92514 1.50234 0.92346 1.18975 0.94439 0.93011 0.94875 1.21382 0.98047 0.93061 1.00718 1.21850 0.93845 0.89698 1.00229 1.60519 1.19948 1.00877 1.50668 1.20947 0.93355 0.85883 1.03012 1.19558 0.96948 0.95861 0.91595 1.21296 0.97348 0.95926 1.00417 1.17522 0.97315 0.95969 0.81076 1.91515 1.87884 1.86451 1.45911 1.21106 1.03023 1.03022 0.89559 1.20587 0.98576 0.97489 0.87349 1.98396 1.87656 1.85554 1.30861 1.21215 0.96707 0.95752 0.99496 0.92781 0.98932 0.98887 0.93124 0.93035 0.91531 0.95189 0.83643 0.89113 0.92453 0.83357 0.82393 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.61 16 11 C 0.07 2.29 5.68 86.30 0.49 2.78 16 12 N -0.69 -17.35 6.49 -517.95 -3.36 -20.71 16 13 C 0.10 1.87 5.81 85.56 0.50 2.37 16 14 C -0.04 -0.70 5.39 -19.87 -0.11 -0.81 16 15 C -0.13 -2.44 9.68 22.32 0.22 -2.22 16 16 C 0.10 1.89 7.30 22.37 0.16 2.06 16 17 F -0.14 -2.83 17.27 44.97 0.78 -2.06 16 18 C -0.15 -2.46 9.81 22.34 0.22 -2.24 16 19 C -0.01 -0.22 6.32 22.32 0.14 -0.08 16 20 Cl -0.05 -0.84 28.96 -2.72 -0.08 -0.91 16 21 C -0.11 -1.86 9.48 22.30 0.21 -1.65 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.35 8.16 8.72 -89.69 -0.78 7.38 16 30 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 31 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -62.91 315.26 2.81 -60.10 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.32 Total: 6.05 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 2.84 Total: -32.35 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.08 Total: -77.21 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -62.91 2.81 -60.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274989658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.091 kcal (2) G-P(sol) polarization free energy of solvation -62.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds