Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46919 * 2 1 4 4 C 1.46897 * 111.00257 * 63.04419 * 3 2 1 5 5 C 1.50697 * 109.47184 * 74.92656 * 4 3 2 6 6 H 1.07998 * 119.99986 * 356.79245 * 5 4 3 7 7 C 1.37877 * 120.00315 * 176.79042 * 5 4 3 8 8 N 1.31513 * 119.99694 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00256 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46974 * 60.00479 * 9 7 5 11 11 H 1.48498 * 109.47249 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47370 * 300.00224 * 9 7 5 13 13 C 1.46907 * 110.99833 * 299.08884 * 3 2 1 14 14 C 1.50701 * 109.46975 * 293.95154 * 13 3 2 15 15 C 1.38228 * 119.98417 * 269.72370 * 14 13 3 16 16 C 1.38447 * 120.00093 * 179.77014 * 15 14 13 17 17 F 1.35092 * 120.01940 * 180.25531 * 16 15 14 18 18 C 1.38459 * 119.95720 * 0.51052 * 16 15 14 19 19 C 1.38285 * 119.96620 * 359.74422 * 18 16 15 20 20 Cl 1.73605 * 120.00345 * 180.02562 * 19 18 16 21 21 C 1.38202 * 119.97605 * 90.00820 * 14 13 3 22 22 H 1.08996 * 109.47147 * 57.80997 * 1 2 3 23 23 H 1.09004 * 109.46975 * 177.81143 * 1 2 3 24 24 H 1.09002 * 109.47018 * 297.80505 * 1 2 3 25 25 H 1.08999 * 109.47385 * 120.00308 * 2 1 3 26 26 H 1.09001 * 109.47028 * 240.00324 * 2 1 3 27 27 H 1.09001 * 109.46921 * 194.93033 * 4 3 2 28 28 H 1.09003 * 109.46724 * 314.93182 * 4 3 2 29 29 H 0.97006 * 120.00279 * 179.97438 * 8 7 5 30 30 H 1.08992 * 109.47017 * 53.95819 * 13 3 2 31 31 H 1.09003 * 109.46477 * 173.95624 * 13 3 2 32 32 H 1.08000 * 119.99365 * 0.02562 * 15 14 13 33 33 H 1.07998 * 120.01579 * 179.76547 * 18 16 15 34 34 H 1.08002 * 119.98498 * 359.94470 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6090 2.0886 1.2224 5 6 2.4500 1.6164 2.3803 6 1 3.1775 0.8317 2.2347 7 6 2.2906 2.1862 3.6257 8 7 1.4043 3.1415 3.8031 9 14 3.3325 1.6004 5.0612 10 1 4.7688 1.8142 4.7500 11 1 2.9704 2.3664 6.2807 12 1 3.0863 0.1547 5.2941 13 6 1.5664 2.1036 -1.1985 14 6 2.2071 1.4968 -2.4202 15 6 3.4186 1.9805 -2.8772 16 6 4.0098 1.4202 -3.9968 17 9 5.1964 1.8892 -4.4407 18 6 3.3816 0.3824 -4.6642 19 6 2.1670 -0.0967 -4.2087 20 17 1.3788 -1.3984 -5.0443 21 6 1.5800 0.4610 -3.0864 22 1 -0.3633 0.5474 -0.8697 23 1 -0.3633 -1.0270 -0.0392 24 1 -0.3633 0.4794 0.9090 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.7460 3.1615 1.0874 28 1 0.5590 1.8792 1.4268 29 1 1.2919 3.5422 4.6793 30 1 0.4824 2.0262 -1.2803 31 1 1.8511 3.1530 -1.1222 32 1 3.9060 2.7928 -2.3585 33 1 3.8401 -0.0528 -5.5398 34 1 0.6316 0.0862 -2.7307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275296849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -42.449621 kcal Electronic energy + Delta-G solvation = -18343.109346 eV Core-core repulsion = 15215.524626 eV Total energy + Delta-G solvation = -3127.584720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.98428 -40.67123 -38.58165 -37.42178 -34.78929 -32.89372 -31.58935 -30.94986 -28.96260 -26.45455 -24.96139 -23.81853 -23.00730 -20.95639 -18.51096 -18.16959 -17.76640 -17.33624 -16.90281 -16.67346 -16.50236 -15.96238 -15.59534 -15.03146 -14.72253 -14.40297 -14.14841 -14.02279 -13.45137 -13.25563 -13.12522 -12.82782 -12.65097 -12.61037 -12.40744 -12.33115 -12.16775 -12.04618 -11.79165 -11.47702 -11.29816 -10.55679 -9.93109 -9.73611 -8.91401 -8.15777 -6.24462 -0.03730 0.00300 0.96613 1.42887 1.44847 1.52678 2.32398 2.44520 3.13930 3.16224 3.43205 3.63227 3.87187 3.94725 4.14614 4.22107 4.28521 4.41025 4.54436 4.58764 4.71930 4.83753 4.94459 4.96130 5.03085 5.04176 5.21850 5.36410 5.40193 5.52736 5.66765 5.70683 6.11302 6.41190 6.63981 6.90363 7.44248 8.93722 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004580 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.559933 B = 6112.728357 C = 6751.537668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 N -0.538 5.538 4 C 0.204 3.796 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.085 3.915 14 C -0.027 4.027 15 C -0.136 4.136 16 C 0.105 3.895 17 F -0.138 7.138 18 C -0.146 4.146 19 C -0.009 4.009 20 Cl -0.050 7.050 21 C -0.113 4.113 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.003 0.997 28 H -0.015 1.015 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -6.615 -17.497 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.042 4.042 14 C -0.028 4.028 15 C -0.155 4.155 16 C 0.085 3.915 17 F -0.117 7.117 18 C -0.166 4.166 19 C -0.036 4.036 20 Cl -0.021 7.021 21 C -0.132 4.132 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.021 0.979 28 H 0.003 0.997 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.540 -6.604 -17.452 18.668 hybrid contribution -0.291 0.131 0.976 1.027 sum 0.250 -6.473 -16.476 17.704 Atomic orbital electron populations 1.22335 0.97889 1.02636 1.01292 1.22044 0.93293 0.90188 1.01595 1.62267 1.59660 1.02688 1.01521 1.19468 0.93605 0.92588 0.86564 1.21422 1.20466 1.19852 0.93904 0.92482 1.25786 0.96761 0.95201 1.01547 1.70056 1.36116 1.27054 1.24185 0.85551 0.79119 0.78471 0.78161 1.19665 1.20956 1.19454 1.21113 0.97621 0.97876 0.87613 1.19515 0.93733 0.94771 0.94831 1.21233 0.96123 1.02302 0.95882 1.17445 0.82824 0.95991 0.95232 1.91505 1.43738 1.87625 1.88800 1.21062 0.95263 0.97578 1.02689 1.20522 0.94349 0.93405 0.95318 1.98383 1.79627 1.46945 1.77151 1.21164 1.01618 0.96216 0.94250 0.91678 0.90644 0.94464 0.92573 0.90262 0.97862 0.99721 0.92818 0.92710 0.90497 0.84179 0.81934 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 9.08 71.98 0.65 -5.10 16 2 C 0.06 2.01 5.55 86.30 0.48 2.49 16 3 N -0.54 -21.69 4.63 -905.36 -4.19 -25.88 16 4 C 0.20 10.29 4.63 85.56 0.40 10.68 16 5 C -0.52 -28.74 8.66 25.60 0.22 -28.52 16 6 H 0.06 3.15 7.60 -2.91 -0.02 3.13 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 9 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.09 2.77 4.88 85.56 0.42 3.19 16 14 C -0.03 -0.75 4.88 -19.87 -0.10 -0.85 16 15 C -0.14 -3.64 9.68 22.32 0.22 -3.43 16 16 C 0.10 2.55 7.30 22.37 0.16 2.72 16 17 F -0.14 -3.47 17.27 44.97 0.78 -2.70 16 18 C -0.15 -3.08 9.81 22.33 0.22 -2.86 16 19 C -0.01 -0.19 6.32 22.32 0.14 -0.05 16 20 Cl -0.05 -0.94 28.96 -2.72 -0.08 -1.02 16 21 C -0.11 -2.67 7.73 22.30 0.17 -2.50 16 22 H 0.06 1.79 5.35 -2.39 -0.01 1.78 16 23 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.04 1.40 6.30 -2.39 -0.02 1.39 16 25 H 0.06 2.25 7.38 -2.39 -0.02 2.24 16 26 H 0.08 2.44 6.10 -2.39 -0.01 2.43 16 27 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 28 H -0.01 -0.79 5.84 -2.39 -0.01 -0.80 16 29 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 30 H 0.05 1.67 5.92 -2.39 -0.01 1.66 16 31 H 0.08 2.57 7.78 -2.39 -0.02 2.55 16 32 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.15 3.16 6.95 -2.91 -0.02 3.14 16 Total: -1.00 -59.89 298.51 3.38 -56.51 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.12 Total: 5.37 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.44 Total: -23.49 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.90 Total: -80.71 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -59.89 3.38 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275296849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.059 kcal (2) G-P(sol) polarization free energy of solvation -59.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds