Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.46896 * 111.00286 * 183.95490 * 12 2 1 14 14 C 1.46901 * 110.99816 * 60.00142 * 12 2 1 15 15 C 1.50700 * 109.47247 * 189.99662 * 14 12 2 16 16 C 1.38221 * 119.98368 * 269.72839 * 15 14 12 17 17 C 1.38449 * 120.00091 * 179.76658 * 16 15 14 18 18 F 1.35103 * 120.01848 * 180.25075 * 17 16 15 19 19 C 1.38456 * 119.95913 * 0.50735 * 17 16 15 20 20 C 1.38291 * 119.96358 * 359.74677 * 19 17 16 21 21 Cl 1.73602 * 119.99911 * 180.02562 * 20 19 17 22 22 C 1.38209 * 119.97813 * 90.00204 * 15 14 12 23 23 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09007 * 109.46868 * 59.99912 * 13 12 2 28 28 H 1.09000 * 109.47584 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47057 * 300.00495 * 13 12 2 30 30 H 1.08999 * 109.47446 * 310.00393 * 14 12 2 31 31 H 1.09006 * 109.46810 * 70.00068 * 14 12 2 32 32 H 1.08002 * 120.00004 * 359.97438 * 16 15 14 33 33 H 1.08005 * 120.01862 * 179.76661 * 19 17 16 34 34 H 1.07999 * 119.97691 * 359.95954 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0197 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5487 -0.0266 -2.4210 15 6 1.8580 -0.8913 -3.6158 16 6 3.0600 -0.7443 -4.2823 17 6 3.3466 -1.5419 -5.3770 18 9 4.5234 -1.4019 -6.0257 19 6 2.4242 -2.4794 -5.8099 20 6 1.2200 -2.6216 -5.1451 21 17 0.0631 -3.7972 -5.6867 22 6 0.9373 -1.8272 -4.0479 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9118 -0.5216 4.4376 27 1 3.8029 -1.3532 -0.3064 28 1 3.8210 -1.3111 -2.0861 29 1 3.9186 0.2050 -1.1590 30 1 0.4723 0.1323 -2.3564 31 1 2.0520 0.9344 -2.5280 32 1 3.7770 -0.0094 -3.9470 33 1 2.6453 -3.0995 -6.6661 34 1 -0.0031 -1.9387 -3.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275341088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -14.149386 kcal Electronic energy + Delta-G solvation = -18421.068413 eV Core-core repulsion = 15294.710884 eV Total energy + Delta-G solvation = -3126.357530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.02907 -39.54444 -37.27730 -36.43294 -33.08215 -31.53758 -30.56998 -29.88532 -27.20809 -24.71448 -23.86194 -22.83497 -21.47489 -19.55090 -17.48751 -16.92224 -16.59551 -16.33784 -15.77995 -15.30098 -14.91016 -14.53002 -14.14457 -13.62068 -13.54195 -13.20936 -12.88909 -12.63718 -12.30829 -12.11950 -11.84675 -11.54665 -11.36958 -11.15804 -11.04887 -10.85232 -10.62291 -10.45353 -10.18689 -9.58373 -9.13028 -8.91354 -8.75968 -8.61419 -7.49136 -6.11571 -4.10994 0.90694 0.99842 1.90090 3.22328 3.31348 3.33094 3.34518 4.09877 4.34598 4.52343 4.76152 4.86147 4.93853 5.15502 5.20337 5.22189 5.61300 5.72829 5.86974 5.90942 5.97621 6.00694 6.19440 6.29008 6.34988 6.44272 6.50116 6.64335 6.70995 6.84355 7.18882 7.49760 7.81863 7.95910 8.57682 8.94699 9.49519 11.01042 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004687 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.653013 B = 5973.019643 C = 6537.733818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.507 4.507 5 H 0.084 0.916 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.520 5.520 13 C 0.032 3.968 14 C 0.078 3.922 15 C -0.019 4.019 16 C -0.144 4.144 17 C 0.109 3.891 18 F -0.136 7.136 19 C -0.156 4.156 20 C -0.008 4.008 21 Cl -0.063 7.063 22 C -0.099 4.099 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -0.390 -18.226 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.545 4.545 5 H 0.102 0.898 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.244 5.244 13 C -0.116 4.116 14 C -0.049 4.049 15 C -0.020 4.020 16 C -0.163 4.163 17 C 0.090 3.910 18 F -0.115 7.115 19 C -0.176 4.176 20 C -0.034 4.034 21 Cl -0.034 7.034 22 C -0.118 4.118 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.824 -0.960 -18.066 18.183 hybrid contribution -0.122 1.473 0.075 1.480 sum -1.945 0.513 -17.991 18.103 Atomic orbital electron populations 1.22245 0.98466 1.01522 0.98333 1.19725 0.91527 0.92684 0.88548 0.98295 1.20955 1.32191 1.13608 0.87788 0.89826 1.24915 0.95773 0.96603 0.95790 1.69871 1.45605 1.40181 0.97910 0.86896 0.80783 0.83829 0.76915 1.20455 1.22431 1.19457 1.62008 1.10350 1.51588 1.00465 1.22353 0.87659 0.99489 1.02146 1.21232 1.01978 0.93417 0.88311 1.19733 0.92008 0.95251 0.95028 1.21212 0.98562 1.01167 0.95379 1.17369 0.82367 0.97886 0.93406 1.91512 1.44614 1.95010 1.80342 1.20851 0.93122 1.00826 1.02773 1.20553 0.91395 0.94463 0.97016 1.98378 1.58621 1.56949 1.89467 1.21040 1.01258 0.94716 0.94829 0.91852 0.93877 0.95158 0.92548 0.89690 0.93276 0.96682 0.89158 0.94198 0.84309 0.84052 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.48 37.16 0.31 -2.76 16 2 C 0.18 4.11 1.65 -68.87 -0.11 4.00 16 3 H 0.00 -0.01 7.18 -51.93 -0.37 -0.38 16 4 C -0.51 -13.70 8.51 -34.44 -0.29 -13.99 16 5 H 0.08 2.46 6.64 -52.49 -0.35 2.12 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 8 Si 0.89 21.31 24.39 -169.99 -4.15 17.16 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 12 N -0.52 -10.09 4.61 -237.73 -1.10 -11.19 16 13 C 0.03 0.59 8.91 60.06 0.54 1.12 16 14 C 0.08 1.21 4.93 -4.98 -0.02 1.19 16 15 C -0.02 -0.26 4.88 -104.64 -0.51 -0.77 16 16 C -0.14 -1.84 7.89 -39.51 -0.31 -2.15 16 17 C 0.11 1.35 7.30 -39.42 -0.29 1.06 16 18 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 19 C -0.16 -1.80 9.81 -39.48 -0.39 -2.19 16 20 C -0.01 -0.09 6.32 -39.51 -0.25 -0.34 16 21 Cl -0.06 -0.70 28.96 -51.86 -1.50 -2.20 16 22 C -0.10 -1.28 9.48 -39.54 -0.37 -1.66 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.04 0.94 3.31 -51.93 -0.17 0.77 16 25 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.08 1.78 6.23 -51.92 -0.32 1.46 16 28 H 0.05 0.80 5.91 -51.93 -0.31 0.49 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 1.33 5.77 -51.93 -0.30 1.03 16 31 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 32 H 0.14 1.65 8.00 -52.49 -0.42 1.23 16 33 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -28.50 291.30 -7.20 -35.69 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.86 Total: -1.58 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.80 Total: -14.59 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.32 Total: -37.22 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.50 -7.20 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275341088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.544 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds