Wall clock time and date at job start Mon Mar 30 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31514 * 120.00481 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99745 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47209 * 90.00365 * 8 6 4 10 10 H 1.48506 * 109.47294 * 210.00213 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00116 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.46896 * 111.00286 * 183.95490 * 12 2 1 14 14 C 1.46901 * 110.99816 * 60.00142 * 12 2 1 15 15 C 1.50700 * 109.47247 * 189.99662 * 14 12 2 16 16 C 1.38221 * 119.98368 * 269.72839 * 15 14 12 17 17 C 1.38449 * 120.00091 * 179.76658 * 16 15 14 18 18 F 1.35103 * 120.01848 * 180.25075 * 17 16 15 19 19 C 1.38456 * 119.95913 * 0.50735 * 17 16 15 20 20 C 1.38291 * 119.96358 * 359.74677 * 19 17 16 21 21 Cl 1.73602 * 119.99911 * 180.02562 * 20 19 17 22 22 C 1.38209 * 119.97813 * 90.00204 * 15 14 12 23 23 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09007 * 109.46868 * 59.99912 * 13 12 2 28 28 H 1.09000 * 109.47584 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47057 * 300.00495 * 13 12 2 30 30 H 1.08999 * 109.47446 * 310.00393 * 14 12 2 31 31 H 1.09006 * 109.46810 * 70.00068 * 14 12 2 32 32 H 1.08002 * 120.00004 * 359.97438 * 16 15 14 33 33 H 1.08005 * 120.01862 * 179.76661 * 19 17 16 34 34 H 1.07999 * 119.97691 * 359.95954 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 2.1425 -0.8556 3.5567 8 14 0.6368 1.2877 2.6540 9 1 -0.7926 0.8881 2.7031 10 1 0.9937 2.0040 3.9050 11 1 0.8610 2.1824 1.4902 12 7 2.0197 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5487 -0.0266 -2.4210 15 6 1.8580 -0.8913 -3.6158 16 6 3.0600 -0.7443 -4.2823 17 6 3.3466 -1.5419 -5.3770 18 9 4.5234 -1.4019 -6.0257 19 6 2.4242 -2.4794 -5.8099 20 6 1.2200 -2.6216 -5.1451 21 17 0.0631 -3.7972 -5.6867 22 6 0.9373 -1.8272 -4.0479 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9118 -0.5216 4.4376 27 1 3.8029 -1.3532 -0.3064 28 1 3.8210 -1.3111 -2.0861 29 1 3.9186 0.2050 -1.1590 30 1 0.4723 0.1323 -2.3564 31 1 2.0520 0.9344 -2.5280 32 1 3.7770 -0.0094 -3.9470 33 1 2.6453 -3.0995 -6.6661 34 1 -0.0031 -1.9387 -3.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275341088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:19 Heat of formation + Delta-G solvation = -31.410859 kcal Electronic energy + Delta-G solvation = -18421.816927 eV Core-core repulsion = 15294.710884 eV Total energy + Delta-G solvation = -3127.106043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.99207 -40.60403 -38.65978 -37.43828 -34.88589 -33.01856 -31.62788 -31.35146 -28.61488 -26.52679 -25.28924 -23.81086 -22.70615 -21.18780 -18.91138 -18.41104 -17.68847 -17.31545 -17.03665 -16.74441 -16.14199 -15.89193 -15.61706 -15.10185 -14.70581 -14.57327 -14.20136 -14.14242 -13.78740 -13.49181 -13.12787 -12.81605 -12.64327 -12.51306 -12.46130 -12.18811 -12.07670 -12.00030 -11.84149 -11.41858 -11.01056 -10.71401 -9.93420 -9.72957 -9.02014 -8.25875 -6.29413 -0.05916 0.02123 0.98514 1.32734 1.37366 1.47209 2.32712 2.33707 3.08297 3.11702 3.34786 3.58268 3.86050 3.98882 4.14156 4.17616 4.39379 4.53538 4.55705 4.62499 4.68017 4.80780 4.84894 4.87245 4.93198 5.05112 5.08541 5.22641 5.36533 5.46622 5.65939 5.68332 6.01124 6.33052 6.67824 6.78057 7.35466 8.90420 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.004687 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.653013 B = 5973.019643 C = 6537.733818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.184 3.816 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.042 0.958 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.302 1.302 11 H -0.248 1.248 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.081 3.919 15 C -0.031 4.031 16 C -0.144 4.144 17 C 0.104 3.896 18 F -0.138 7.138 19 C -0.148 4.148 20 C -0.012 4.012 21 Cl -0.054 7.054 22 C -0.102 4.102 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.146 0.854 33 H 0.161 0.839 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 0.645 -20.451 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.077 3.923 3 H 0.012 0.988 4 C -0.545 4.545 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.230 1.230 11 H -0.172 1.172 12 N -0.257 5.257 13 C -0.110 4.110 14 C -0.046 4.046 15 C -0.032 4.032 16 C -0.164 4.164 17 C 0.084 3.916 18 F -0.116 7.116 19 C -0.167 4.167 20 C -0.038 4.038 21 Cl -0.024 7.024 22 C -0.121 4.121 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.024 0.073 -20.332 20.556 hybrid contribution 0.324 1.031 0.657 1.264 sum -2.700 1.104 -19.675 19.890 Atomic orbital electron populations 1.22147 0.96535 1.01709 0.99822 1.19552 0.92956 0.91749 0.88075 0.98760 1.21237 1.30931 1.12300 0.90034 0.94001 1.25770 0.97394 0.99974 0.95378 1.70035 1.47906 1.42508 0.98561 0.85873 0.79356 0.80052 0.77211 1.19036 1.22999 1.17196 1.61888 1.10537 1.52178 1.01072 1.22238 0.87684 0.99465 1.01577 1.21254 1.02560 0.93890 0.86863 1.19542 0.92763 0.95900 0.94949 1.21290 0.98389 1.01299 0.95404 1.17413 0.82529 0.98172 0.93477 1.91513 1.44721 1.95047 1.80341 1.21072 0.92507 1.00287 1.02874 1.20585 0.91792 0.94583 0.96875 1.98385 1.58269 1.56485 1.89307 1.21138 1.01357 0.94553 0.95074 0.92436 0.94763 0.91147 0.92618 0.93273 0.90913 0.96192 0.88067 0.93145 0.83603 0.82145 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.48 71.98 0.61 -5.01 16 2 C 0.18 8.12 1.65 44.17 0.07 8.19 16 3 H -0.01 -0.23 7.18 -2.39 -0.02 -0.24 16 4 C -0.51 -27.97 8.51 25.60 0.22 -27.76 16 5 H 0.04 2.60 6.64 -2.91 -0.02 2.58 16 6 C 0.01 0.68 5.45 84.65 0.46 1.14 16 7 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 8 Si 0.95 43.56 24.39 68.60 1.67 45.23 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.25 -10.45 6.53 99.48 0.65 -9.80 16 12 N -0.53 -20.04 4.61 -906.04 -4.18 -24.22 16 13 C 0.04 1.42 8.91 127.69 1.14 2.56 16 14 C 0.08 2.30 4.93 85.56 0.42 2.72 16 15 C -0.03 -0.76 4.88 -19.88 -0.10 -0.86 16 16 C -0.14 -3.36 7.89 22.32 0.18 -3.18 16 17 C 0.10 2.32 7.30 22.37 0.16 2.48 16 18 F -0.14 -3.16 17.27 44.97 0.78 -2.38 16 19 C -0.15 -3.02 9.81 22.33 0.22 -2.81 16 20 C -0.01 -0.25 6.32 22.32 0.14 -0.11 16 21 Cl -0.05 -1.06 28.96 -2.72 -0.08 -1.14 16 22 C -0.10 -2.39 9.48 22.30 0.21 -2.18 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 24 H 0.03 1.38 3.31 -2.38 -0.01 1.38 16 25 H 0.07 2.15 6.20 -2.39 -0.01 2.14 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 27 H 0.05 2.14 6.23 -2.38 -0.01 2.13 16 28 H 0.07 2.29 5.91 -2.39 -0.01 2.28 16 29 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.10 2.61 5.77 -2.39 -0.01 2.60 16 31 H 0.05 1.34 8.06 -2.38 -0.02 1.32 16 32 H 0.15 3.13 8.00 -2.91 -0.02 3.11 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -62.19 291.30 3.26 -58.93 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.04 Total: 6.71 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.74 Total: -24.82 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -3.88 Total: -82.53 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.67 Total: 45.23 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -62.19 3.26 -58.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275341088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.516 kcal (2) G-P(sol) polarization free energy of solvation -62.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds