Wall clock time and date at job start Mon Mar 30 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99475 * 2 1 4 4 C 1.38995 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.39135 * 119.70959 * 4.97521 * 4 2 1 6 6 C 1.38292 * 119.09875 * 180.02562 * 5 4 2 7 7 C 1.38883 * 118.50826 * 359.97438 * 6 5 4 8 8 S 1.76202 * 120.33799 * 180.02562 * 7 6 5 9 9 O 1.42105 * 106.40292 * 203.54376 * 8 7 6 10 10 O 1.42090 * 106.40220 * 336.46637 * 8 7 6 11 11 N 1.65603 * 107.21365 * 90.00727 * 8 7 6 12 12 C 1.36933 * 120.00388 * 64.99852 * 11 8 7 13 13 H 1.08006 * 119.99799 * 0.02562 * 12 11 8 14 14 C 1.38816 * 120.00159 * 179.97438 * 12 11 8 15 15 N 1.31613 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99739 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47430 * 60.00312 * 16 14 12 18 18 H 1.48498 * 109.46993 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47344 * 299.99933 * 16 14 12 20 20 C 1.38019 * 119.32637 * 0.03298 * 7 6 5 21 21 N 1.31974 * 120.86189 * 359.96725 * 20 7 6 22 22 H 1.09000 * 109.46764 * 269.99471 * 1 2 3 23 23 H 1.09005 * 109.47418 * 29.99927 * 1 2 3 24 24 H 1.09005 * 109.47036 * 149.99820 * 1 2 3 25 25 H 1.08999 * 109.46935 * 270.00038 * 3 2 1 26 26 H 1.08992 * 109.46986 * 30.00182 * 3 2 1 27 27 H 1.09003 * 109.46314 * 150.00384 * 3 2 1 28 28 H 1.07998 * 120.45129 * 359.97438 * 5 4 2 29 29 H 1.07997 * 120.74950 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99718 * 244.99881 * 11 8 7 31 31 H 0.97006 * 119.99866 * 179.97438 * 15 14 12 32 32 H 1.08003 * 119.57170 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1059 6 6 2.1663 -3.5931 -0.1046 7 6 3.5502 -3.5445 0.0019 8 16 4.4951 -5.0317 0.0077 9 8 5.7201 -4.7262 0.6601 10 8 3.6188 -6.0621 0.4427 11 7 4.8769 -5.3759 -1.5665 12 6 5.6927 -4.5332 -2.2733 13 1 6.0875 -3.6442 -1.8039 14 6 6.0131 -4.8221 -3.5927 15 7 5.5324 -5.9057 -4.1645 16 14 7.1265 -3.6729 -4.5565 17 1 8.4449 -3.5779 -3.8798 18 1 7.3134 -4.2024 -5.9312 19 1 6.5069 -2.3250 -4.6247 20 6 4.1778 -2.3194 0.1032 21 7 3.4803 -1.1990 0.0994 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 2.3791 1.5835 -1.0277 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.3852 -2.4041 -0.1867 29 1 1.6517 -4.5391 -0.1854 30 1 4.5226 -6.1745 -1.9880 31 1 5.7560 -6.1074 -5.0866 32 1 5.2537 -2.2770 0.1866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279612098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:41 Heat of formation + Delta-G solvation = -22.050087 kcal Electronic energy + Delta-G solvation = -18741.055689 eV Core-core repulsion = 15636.319228 eV Total energy + Delta-G solvation = -3104.736462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.98612 -36.48942 -36.08195 -34.71165 -34.56091 -32.24492 -30.90031 -30.31391 -28.32675 -25.37082 -24.47466 -23.07365 -21.56425 -18.51978 -18.11183 -17.57497 -16.77598 -16.46906 -16.05486 -15.35277 -14.59832 -14.58441 -14.38224 -14.14317 -13.37705 -13.28330 -13.08392 -12.74946 -12.52766 -12.26027 -12.03016 -11.93154 -11.26388 -11.07225 -11.02979 -10.88111 -10.56287 -10.44725 -10.19103 -10.00475 -9.94236 -9.49104 -9.12837 -8.24000 -7.63454 -6.41198 -3.86846 1.29321 1.61869 1.68411 2.87488 3.22826 3.25222 3.28581 3.96279 4.15111 4.53780 4.63450 4.84966 4.90191 5.04228 5.12981 5.15737 5.21659 5.29940 5.44709 5.50007 5.54485 5.73350 5.81476 6.09226 6.11495 6.37089 6.74026 6.89373 7.05958 7.36107 7.54046 8.26372 8.70788 8.85566 9.27714 10.75145 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.006755 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.898040 B = 4144.000332 C = 5017.112244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.619 5.619 3 C 0.098 3.902 4 C 0.426 3.574 5 C -0.264 4.264 6 C 0.057 3.943 7 C -0.767 4.767 8 S 2.640 3.360 9 O -0.973 6.973 10 O -1.003 7.003 11 N -0.953 5.953 12 C -0.282 4.282 13 H 0.102 0.898 14 C 0.032 3.968 15 N -0.884 5.884 16 Si 0.920 3.080 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.246 3.754 21 N -0.557 5.557 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.411 0.589 31 H 0.273 0.727 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 10.507 4.653 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.332 5.332 3 C -0.045 4.045 4 C 0.192 3.808 5 C -0.289 4.289 6 C 0.030 3.970 7 C -0.853 4.853 8 S 2.729 3.271 9 O -0.963 6.963 10 O -0.992 6.992 11 N -0.706 5.706 12 C -0.420 4.420 13 H 0.119 0.881 14 C -0.175 4.175 15 N -0.525 5.525 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.086 3.914 21 N -0.274 5.274 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.246 0.754 31 H 0.083 0.917 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.517 11.124 5.495 15.049 hybrid contribution -0.606 0.169 -1.281 1.427 sum -9.123 11.293 4.215 15.117 Atomic orbital electron populations 1.21715 0.78597 1.03095 1.01473 1.46276 1.05123 1.03275 1.78561 1.21577 0.97801 0.83766 1.01359 1.18494 0.88885 0.85628 0.87829 1.21400 1.00756 0.92109 1.14598 1.20977 0.92092 0.98216 0.85689 1.32509 1.08210 1.23175 1.21410 1.05024 0.73573 0.73536 0.75008 1.93475 1.43073 1.85330 1.74448 1.93413 1.67115 1.56543 1.82112 1.51584 1.55021 1.30658 1.33338 1.19190 1.21096 1.06437 0.95279 0.88065 1.25182 0.98696 0.97073 0.96535 1.69680 1.44199 1.24531 1.14128 0.86089 0.80543 0.79941 0.78747 1.19504 1.20799 1.19902 1.22188 0.99534 0.85381 0.84288 1.67221 1.05924 1.31991 1.22305 0.92995 0.91099 0.90857 0.93416 0.92066 0.89991 0.84926 0.83911 0.75362 0.91689 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.28 59.85 0.62 1.45 16 2 N -0.62 -7.96 3.39 -189.66 -0.64 -8.60 16 3 C 0.10 1.07 10.50 59.85 0.63 1.70 16 4 C 0.43 7.01 7.37 -155.02 -1.14 5.87 16 5 C -0.26 -4.14 9.27 -39.23 -0.36 -4.51 16 6 C 0.06 1.01 9.64 -39.32 -0.38 0.63 16 7 C -0.77 -15.23 5.91 -39.42 -0.23 -15.46 16 8 S 2.64 58.22 5.71 -107.50 -0.61 57.61 16 9 O -0.97 -23.39 17.00 -57.17 -0.97 -24.37 16 10 O -1.00 -23.24 17.35 -57.17 -0.99 -24.24 16 11 N -0.95 -22.95 5.75 31.50 0.18 -22.77 16 12 C -0.28 -7.15 9.63 -15.06 -0.15 -7.30 16 13 H 0.10 2.43 7.82 -52.48 -0.41 2.02 16 14 C 0.03 0.82 5.50 -17.43 -0.10 0.72 16 15 N -0.88 -23.63 13.06 55.49 0.72 -22.90 16 16 Si 0.92 19.97 29.55 -169.99 -5.02 14.95 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.25 4.76 10.67 -17.57 -0.19 4.57 16 21 N -0.56 -10.21 9.08 -12.44 -0.11 -10.32 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 24 H 0.07 0.62 5.98 -51.93 -0.31 0.31 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.49 8.07 -51.93 -0.42 0.08 16 27 H 0.08 1.01 7.30 -51.93 -0.38 0.63 16 28 H 0.13 1.62 6.03 -52.49 -0.32 1.31 16 29 H 0.14 2.30 7.70 -52.49 -0.40 1.89 16 30 H 0.41 10.04 8.02 -34.47 -0.28 9.76 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.17 3.08 7.62 -52.48 -0.40 2.68 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -32.04 292.19 -7.67 -39.70 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.32 Total: 8.87 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.30 Total: -12.33 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: 0.15 Total: -64.60 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.96 Total: -48.60 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 58.22 SS G_CDS: -0.61 Total: 57.61 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.04 -7.67 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279612098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.652 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds