Wall clock time and date at job start Mon Mar 30 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99475 * 2 1 4 4 C 1.38995 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.39135 * 119.70959 * 4.97521 * 4 2 1 6 6 C 1.38292 * 119.09875 * 180.02562 * 5 4 2 7 7 C 1.38883 * 118.50826 * 359.97438 * 6 5 4 8 8 S 1.76202 * 120.33799 * 180.02562 * 7 6 5 9 9 O 1.42105 * 106.40292 * 203.54376 * 8 7 6 10 10 O 1.42090 * 106.40220 * 336.46637 * 8 7 6 11 11 N 1.65603 * 107.21365 * 90.00727 * 8 7 6 12 12 C 1.36933 * 120.00388 * 64.99852 * 11 8 7 13 13 H 1.08006 * 119.99799 * 0.02562 * 12 11 8 14 14 C 1.38816 * 120.00159 * 179.97438 * 12 11 8 15 15 N 1.31613 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99739 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47430 * 60.00312 * 16 14 12 18 18 H 1.48498 * 109.46993 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47344 * 299.99933 * 16 14 12 20 20 C 1.38019 * 119.32637 * 0.03298 * 7 6 5 21 21 N 1.31974 * 120.86189 * 359.96725 * 20 7 6 22 22 H 1.09000 * 109.46764 * 269.99471 * 1 2 3 23 23 H 1.09005 * 109.47418 * 29.99927 * 1 2 3 24 24 H 1.09005 * 109.47036 * 149.99820 * 1 2 3 25 25 H 1.08999 * 109.46935 * 270.00038 * 3 2 1 26 26 H 1.08992 * 109.46986 * 30.00182 * 3 2 1 27 27 H 1.09003 * 109.46314 * 150.00384 * 3 2 1 28 28 H 1.07998 * 120.45129 * 359.97438 * 5 4 2 29 29 H 1.07997 * 120.74950 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99718 * 244.99881 * 11 8 7 31 31 H 0.97006 * 119.99866 * 179.97438 * 15 14 12 32 32 H 1.08003 * 119.57170 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1600 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1059 6 6 2.1663 -3.5931 -0.1046 7 6 3.5502 -3.5445 0.0019 8 16 4.4951 -5.0317 0.0077 9 8 5.7201 -4.7262 0.6601 10 8 3.6188 -6.0621 0.4427 11 7 4.8769 -5.3759 -1.5665 12 6 5.6927 -4.5332 -2.2733 13 1 6.0875 -3.6442 -1.8039 14 6 6.0131 -4.8221 -3.5927 15 7 5.5324 -5.9057 -4.1645 16 14 7.1265 -3.6729 -4.5565 17 1 8.4449 -3.5779 -3.8798 18 1 7.3134 -4.2024 -5.9312 19 1 6.5069 -2.3250 -4.6247 20 6 4.1778 -2.3194 0.1032 21 7 3.4803 -1.1990 0.0994 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 2.3791 1.5835 -1.0277 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.3852 -2.4041 -0.1867 29 1 1.6517 -4.5391 -0.1854 30 1 4.5226 -6.1745 -1.9880 31 1 5.7560 -6.1074 -5.0866 32 1 5.2537 -2.2770 0.1866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279612098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:41 Heat of formation + Delta-G solvation = -45.921004 kcal Electronic energy + Delta-G solvation = -18742.090810 eV Core-core repulsion = 15636.319228 eV Total energy + Delta-G solvation = -3105.771582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29643 -38.01583 -37.58008 -36.64846 -36.39631 -33.60524 -32.76650 -31.62904 -29.16342 -26.51910 -26.36714 -24.43526 -22.78867 -20.29246 -19.96385 -18.98616 -18.36827 -17.81651 -17.71019 -16.41019 -16.35067 -16.07596 -15.81233 -15.40280 -15.13589 -14.51384 -14.38532 -14.05346 -13.77605 -13.43149 -13.09945 -13.05705 -12.96918 -12.95716 -12.86986 -12.79110 -12.33990 -12.14594 -11.82176 -11.76765 -11.39278 -10.80832 -10.55550 -10.11470 -8.78523 -8.26378 -5.83987 -0.25353 -0.00759 0.27517 1.48455 1.52022 1.58069 1.86043 2.32878 2.56988 2.79002 3.04606 3.27375 3.41949 3.61592 3.83469 4.04622 4.22648 4.31337 4.41051 4.48698 4.67813 4.75526 4.77818 4.88343 4.92921 5.00698 5.14512 5.41923 5.67719 5.87270 6.17936 6.80847 6.93148 7.01851 7.38600 8.92212 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.006755 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.898040 B = 4144.000332 C = 5017.112244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.612 5.612 3 C 0.092 3.908 4 C 0.419 3.581 5 C -0.254 4.254 6 C 0.045 3.955 7 C -0.785 4.785 8 S 2.695 3.305 9 O -0.998 6.998 10 O -1.009 7.009 11 N -0.980 5.980 12 C -0.312 4.312 13 H 0.105 0.895 14 C -0.018 4.018 15 N -0.932 5.932 16 Si 0.977 3.023 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.240 3.760 21 N -0.570 5.570 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.173 0.827 29 H 0.157 0.843 30 H 0.406 0.594 31 H 0.270 0.730 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 12.954 5.527 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.323 5.323 3 C -0.051 4.051 4 C 0.182 3.818 5 C -0.279 4.279 6 C 0.019 3.981 7 C -0.878 4.878 8 S 2.786 3.214 9 O -0.988 6.988 10 O -0.999 6.999 11 N -0.733 5.733 12 C -0.445 4.445 13 H 0.123 0.877 14 C -0.219 4.219 15 N -0.575 5.575 16 Si 0.801 3.199 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.193 1.193 20 C 0.079 3.921 21 N -0.289 5.289 22 H 0.087 0.913 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.191 0.809 29 H 0.175 0.825 30 H 0.241 0.759 31 H 0.079 0.921 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.729 13.588 6.303 18.424 hybrid contribution -0.189 -0.360 -1.211 1.278 sum -10.918 13.228 5.092 17.891 Atomic orbital electron populations 1.22077 0.75833 1.04832 1.03086 1.46733 1.06880 1.02575 1.76092 1.21744 0.97719 0.83719 1.01884 1.18966 0.88576 0.87519 0.86711 1.21758 1.02648 0.90796 1.12721 1.21256 0.91216 1.00000 0.85623 1.31685 1.09047 1.20986 1.26060 1.01846 0.73000 0.73442 0.73125 1.93455 1.44808 1.85884 1.74663 1.93420 1.67508 1.57190 1.81807 1.51218 1.58086 1.32093 1.31879 1.19359 1.23508 1.06071 0.95604 0.87729 1.25891 1.00004 0.98444 0.97522 1.69782 1.46812 1.26613 1.14251 0.85229 0.78964 0.78304 0.77413 1.19178 1.20705 1.19301 1.22236 0.99886 0.85665 0.84308 1.67265 1.07186 1.31142 1.23292 0.91313 0.88424 0.90189 0.93050 0.88520 0.91763 0.80938 0.82500 0.75920 0.92079 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.28 127.77 1.31 2.35 16 2 N -0.61 -13.28 3.39 -753.95 -2.56 -15.84 16 3 C 0.09 1.69 10.50 127.77 1.34 3.03 16 4 C 0.42 12.54 7.37 133.06 0.98 13.52 16 5 C -0.25 -7.12 9.27 22.50 0.21 -6.91 16 6 C 0.05 1.51 9.64 22.44 0.22 1.73 16 7 C -0.79 -30.57 5.91 22.37 0.13 -30.44 16 8 S 2.69 119.43 5.71 -56.49 -0.32 119.10 16 9 O -1.00 -48.41 17.00 -128.00 -2.18 -50.58 16 10 O -1.01 -46.33 17.35 -128.00 -2.22 -48.55 16 11 N -0.98 -48.57 5.75 -54.26 -0.31 -48.88 16 12 C -0.31 -16.34 9.63 84.04 0.81 -15.53 16 13 H 0.11 5.19 7.82 -2.91 -0.02 5.17 16 14 C -0.02 -0.94 5.50 84.86 0.47 -0.47 16 15 N -0.93 -51.90 13.06 21.65 0.28 -51.62 16 16 Si 0.98 42.00 29.55 68.60 2.03 44.02 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 C 0.24 9.14 10.67 84.62 0.90 10.05 16 21 N -0.57 -20.01 9.08 -193.27 -1.75 -21.77 16 22 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.10 0.77 8.07 -2.38 -0.02 0.75 16 24 H 0.08 0.93 5.98 -2.38 -0.01 0.91 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.12 8.07 -2.39 -0.02 1.10 16 27 H 0.06 1.44 7.30 -2.39 -0.02 1.42 16 28 H 0.17 3.35 6.03 -2.91 -0.02 3.33 16 29 H 0.16 4.71 7.70 -2.91 -0.02 4.68 16 30 H 0.41 20.69 8.02 -96.75 -0.78 19.92 16 31 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 32 H 0.17 6.19 7.62 -2.91 -0.02 6.17 16 Total: -1.00 -69.97 292.19 -0.28 -70.25 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.38 Total: 26.53 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 6.37 Total: -22.67 kcal Atomic # 7 Polarization: -133.77 SS G_CDS: -4.34 Total: -138.11 kcal Atomic # 8 Polarization: -94.74 SS G_CDS: -4.40 Total: -99.13 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 119.43 SS G_CDS: -0.32 Total: 119.10 kcal Total: -69.97 -0.28 -70.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279612098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.331 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds