Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 N 1.46512 * 109.47000 * 180.02562 * 16 14 12 18 18 C 1.35040 * 126.03866 * 125.00109 * 17 16 14 19 19 C 1.35369 * 107.73009 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 126.04496 * 179.97438 * 19 18 17 21 21 C 1.39924 * 107.90587 * 0.02562 * 19 18 17 22 22 N 1.30845 * 108.21612 * 359.75528 * 21 19 18 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 30 30 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 31 31 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 32 32 H 1.07999 * 126.13225 * 359.93952 * 18 17 16 33 33 H 1.08007 * 125.89171 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 7 4.1087 0.1750 4.1117 18 6 3.9176 0.4803 5.4132 19 6 4.8778 1.3633 5.7748 20 17 5.0751 2.0705 7.3479 21 6 5.6823 1.6061 4.6560 22 7 5.2251 0.8907 3.6604 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5001 29 1 0.6905 -2.3002 0.9845 30 1 2.4471 -1.0881 3.9072 31 1 3.9005 -1.6025 3.0176 32 1 3.1381 0.0903 6.0510 33 1 6.5363 2.2665 4.6215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287805425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = 48.370059 kcal Electronic energy + Delta-G solvation = -18470.045257 eV Core-core repulsion = 15366.318736 eV Total energy + Delta-G solvation = -3103.726521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25535 -39.07383 -36.43792 -35.47189 -33.41382 -32.71239 -30.14266 -29.57451 -27.13836 -26.21640 -25.25699 -22.12336 -21.18898 -20.69535 -18.58277 -17.37655 -16.82566 -16.33708 -15.57482 -15.27648 -14.59124 -14.46556 -14.21627 -13.90745 -13.33572 -12.91711 -12.89809 -12.68020 -12.18330 -11.69878 -11.65063 -11.61843 -11.36266 -11.11116 -10.85933 -10.78296 -10.43508 -10.29630 -10.22703 -9.73299 -9.24340 -9.03388 -8.48756 -8.37653 -7.72709 -6.12068 -4.20418 1.73142 1.94612 2.67069 2.78060 3.12298 3.23358 3.31880 3.34519 3.72775 4.34904 4.57173 4.64738 4.85393 4.96452 5.09795 5.19707 5.47875 5.50235 5.60780 5.90774 6.16111 6.39086 6.65588 6.70466 6.77309 6.96644 7.30445 7.41916 7.61554 7.64819 7.94125 8.11459 8.37655 8.73967 8.89969 9.46298 10.93380 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.003892 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.349051 B = 7191.672696 C = 7351.418382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.490 3.510 15 O -0.522 6.522 16 C 0.113 3.887 17 N -0.346 5.346 18 C 0.069 3.931 19 C -0.187 4.187 20 Cl -0.051 7.051 21 C 0.052 3.948 22 N -0.243 5.243 23 H 0.011 0.989 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.263 0.737 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.181 0.819 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -4.899 16.220 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.274 3.726 15 O -0.398 6.398 16 C -0.011 4.011 17 N -0.128 5.128 18 C -0.078 4.078 19 C -0.226 4.226 20 Cl -0.024 7.024 21 C -0.135 4.135 22 N -0.063 5.063 23 H 0.030 0.970 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.198 0.802 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.294 -4.526 14.748 15.775 hybrid contribution 0.081 -0.308 0.117 0.340 sum 3.375 -4.834 14.865 15.991 Atomic orbital electron populations 1.22103 0.98080 0.99410 1.00961 1.18982 0.90865 0.94540 0.79666 0.91862 1.21328 1.31905 1.13062 0.90199 0.92176 1.24896 0.94895 0.94960 0.99036 1.69880 1.36340 1.22558 1.23760 0.86421 0.78594 0.79588 0.82679 1.19797 1.20917 1.20860 1.48249 1.48778 1.11709 1.23571 1.21634 1.02312 0.83176 0.99078 1.20157 0.80329 0.87699 0.84454 1.90752 1.56724 1.16441 1.75854 1.21774 0.94971 0.91029 0.93372 1.47958 1.22967 1.34764 1.07097 1.22161 1.00228 0.98884 0.86568 1.20687 1.04066 1.08325 0.89552 1.98304 1.97275 1.83081 1.23691 1.23899 1.00567 1.00121 0.88941 1.77723 0.98752 1.08786 1.21048 0.96981 0.95003 0.88677 0.92669 0.92853 0.93162 0.90350 0.86061 0.86838 0.80166 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 2 C 0.26 6.45 2.64 -69.08 -0.18 6.27 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.98 8.37 -34.44 -0.29 -14.26 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.59 -11.80 2.75 -175.26 -0.48 -12.28 16 13 C 0.08 1.20 9.48 59.85 0.57 1.77 16 14 C 0.49 9.64 7.70 -10.99 -0.08 9.56 16 15 O -0.52 -12.93 15.04 5.56 0.08 -12.85 16 16 C 0.11 1.52 5.54 -5.19 -0.03 1.49 16 17 N -0.35 -5.21 3.40 -62.50 -0.21 -5.42 16 18 C 0.07 0.85 11.43 -17.16 -0.20 0.65 16 19 C -0.19 -2.42 6.65 -39.97 -0.27 -2.68 16 20 Cl -0.05 -0.57 29.30 -51.86 -1.52 -2.09 16 21 C 0.05 0.75 12.02 -17.34 -0.21 0.54 16 22 N -0.24 -4.25 11.65 30.64 0.36 -3.90 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.51 6.44 -51.92 -0.33 0.17 16 29 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 30 H 0.12 1.09 7.33 -51.93 -0.38 0.71 16 31 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.19 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -33.49 298.71 -5.83 -39.32 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.72 Total: -0.77 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.45 Total: 1.92 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.29 Total: -45.88 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.52 Total: -2.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.49 -5.83 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287805425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.691 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds