Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 N 1.46512 * 109.47000 * 180.02562 * 16 14 12 18 18 C 1.35040 * 126.03866 * 125.00109 * 17 16 14 19 19 C 1.35369 * 107.73009 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 126.04496 * 179.97438 * 19 18 17 21 21 C 1.39924 * 107.90587 * 0.02562 * 19 18 17 22 22 N 1.30845 * 108.21612 * 359.75528 * 21 19 18 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 30 30 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 31 31 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 32 32 H 1.07999 * 126.13225 * 359.93952 * 18 17 16 33 33 H 1.08007 * 125.89171 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 7 4.1087 0.1750 4.1117 18 6 3.9176 0.4803 5.4132 19 6 4.8778 1.3633 5.7748 20 17 5.0751 2.0705 7.3479 21 6 5.6823 1.6061 4.6560 22 7 5.2251 0.8907 3.6604 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5001 29 1 0.6905 -2.3002 0.9845 30 1 2.4471 -1.0881 3.9072 31 1 3.9005 -1.6025 3.0176 32 1 3.1381 0.0903 6.0510 33 1 6.5363 2.2665 4.6215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287805425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = 25.389713 kcal Electronic energy + Delta-G solvation = -18471.041760 eV Core-core repulsion = 15366.318736 eV Total energy + Delta-G solvation = -3104.723024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.30104 -40.58920 -37.37203 -37.15011 -34.97138 -34.18969 -31.60755 -30.91508 -28.31443 -27.56757 -27.26712 -23.59215 -22.19952 -22.05530 -20.07542 -18.55852 -18.47977 -17.91909 -17.10666 -16.71447 -16.15794 -15.69192 -15.38522 -15.14788 -14.65486 -14.31656 -14.23412 -14.06665 -13.48223 -13.39223 -13.02339 -12.95259 -12.70354 -12.63793 -12.60289 -12.30979 -12.19371 -12.12367 -11.42393 -11.19137 -11.00135 -10.57483 -10.36987 -9.39156 -9.35865 -8.16506 -6.33131 0.73307 1.00583 1.39060 1.41485 1.52084 1.65054 1.69697 1.80539 2.28231 2.45226 3.11884 3.52238 3.67091 3.84706 4.02907 4.14758 4.46527 4.53083 4.63724 4.70449 4.80752 4.87626 5.03521 5.09326 5.37546 5.44600 5.58191 5.64934 5.83036 6.02913 6.14505 6.57943 6.75598 6.76948 7.28542 7.43833 8.87871 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.003892 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.349051 B = 7191.672696 C = 7351.418382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.002 0.998 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.597 5.597 13 C 0.075 3.925 14 C 0.478 3.522 15 O -0.587 6.587 16 C 0.124 3.876 17 N -0.359 5.359 18 C 0.083 3.917 19 C -0.201 4.201 20 Cl -0.037 7.037 21 C 0.049 3.951 22 N -0.307 5.307 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.264 0.736 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.178 0.822 31 H 0.139 0.861 32 H 0.226 0.774 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -7.387 18.097 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.020 0.980 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.215 1.215 12 N -0.328 5.328 13 C -0.067 4.067 14 C 0.265 3.735 15 O -0.467 6.467 16 C 0.001 3.999 17 N -0.141 5.141 18 C -0.064 4.064 19 C -0.240 4.240 20 Cl -0.008 7.008 21 C -0.139 4.139 22 N -0.127 5.127 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.195 0.805 31 H 0.156 0.844 32 H 0.243 0.757 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.990 -7.066 16.656 18.338 hybrid contribution 0.190 0.516 -0.385 0.671 sum 3.181 -6.550 16.271 17.826 Atomic orbital electron populations 1.21867 0.96851 1.00384 0.99933 1.18502 0.91732 0.91963 0.81742 0.97973 1.21619 1.31743 1.13018 0.91144 0.92004 1.25743 0.95112 0.95642 1.02112 1.70030 1.37455 1.23937 1.24337 0.85416 0.78230 0.78483 0.78936 1.18764 1.19846 1.21472 1.48215 1.48770 1.13707 1.22150 1.21977 1.02003 0.79736 1.02997 1.21288 0.79095 0.87212 0.85894 1.90722 1.58828 1.19575 1.77596 1.21943 0.96884 0.90101 0.91012 1.48100 1.22699 1.35198 1.08115 1.22884 1.00270 0.97470 0.85776 1.20840 1.04288 1.08876 0.89978 1.98308 1.97271 1.82908 1.22362 1.24288 1.00960 0.99524 0.89082 1.77644 1.00921 1.11036 1.23101 0.95982 0.92833 0.91697 0.92704 0.92384 0.87407 0.90831 0.80494 0.84384 0.75745 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.95 71.98 0.64 -5.51 16 2 C 0.26 13.42 2.64 44.25 0.12 13.54 16 3 H 0.00 0.14 6.90 -2.39 -0.02 0.13 16 4 C -0.54 -28.88 8.37 25.60 0.21 -28.67 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 9 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 N -0.60 -23.32 2.75 -826.80 -2.28 -25.60 16 13 C 0.07 1.93 9.48 127.77 1.21 3.14 16 14 C 0.48 18.51 7.70 87.66 0.68 19.18 16 15 O -0.59 -30.21 15.04 -3.03 -0.05 -30.26 16 16 C 0.12 2.91 5.54 85.63 0.47 3.38 16 17 N -0.36 -10.03 3.40 -351.66 -1.20 -11.23 16 18 C 0.08 1.77 11.43 83.54 0.95 2.73 16 19 C -0.20 -4.82 6.65 22.02 0.15 -4.67 16 20 Cl -0.04 -0.73 29.30 -2.72 -0.08 -0.81 16 21 C 0.05 1.38 12.02 85.25 1.02 2.40 16 22 N -0.31 -10.73 11.65 -56.98 -0.66 -11.39 16 23 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 25 H 0.06 3.44 6.07 -2.38 -0.01 3.42 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.11 1.54 6.44 -2.38 -0.02 1.52 16 29 H 0.07 1.99 6.43 -2.39 -0.02 1.97 16 30 H 0.18 2.07 7.33 -2.39 -0.02 2.06 16 31 H 0.14 2.59 8.11 -2.39 -0.02 2.57 16 32 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.20 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -79.19 298.71 5.05 -74.14 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.13 Total: 6.30 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.91 Total: 6.70 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.89 Total: -101.16 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -79.19 5.05 -74.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287805425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.530 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds