Wall clock time and date at job start Mon Mar 30 2020 01:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21281 * 120.00208 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00070 * 180.02562 * 14 12 2 17 17 N 1.46501 * 109.47232 * 179.97438 * 16 14 12 18 18 C 1.35048 * 126.03894 * 124.99907 * 17 16 14 19 19 C 1.35367 * 107.73154 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 126.04936 * 179.97438 * 19 18 17 21 21 C 1.39932 * 107.90800 * 359.97438 * 19 18 17 22 22 N 1.30856 * 108.21259 * 359.76042 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 28 28 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 29 29 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 30 30 H 1.08999 * 109.47401 * 300.00043 * 16 14 12 31 31 H 1.09002 * 109.47014 * 60.00321 * 16 14 12 32 32 H 1.07998 * 126.13150 * 359.94502 * 18 17 16 33 33 H 1.07997 * 125.89449 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2950 -0.7459 -3.3141 17 7 4.1084 0.1750 -4.1119 18 6 5.3785 -0.0360 -4.5196 19 6 5.7691 1.0483 -5.2296 20 17 7.3204 1.2770 -5.9744 21 6 4.7013 1.9522 -5.2570 22 7 3.7039 1.4273 -4.5921 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7091 1.1614 3.4844 27 1 0.7375 -2.1444 -1.9994 28 1 2.4628 -2.5819 -1.9865 29 1 1.5295 -2.5969 -0.4708 30 1 3.9003 -1.6025 -3.0179 31 1 2.4469 -1.0880 -3.9073 32 1 5.9755 -0.9125 -4.3153 33 1 4.6991 2.9149 -5.7465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287805429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:09 Heat of formation + Delta-G solvation = 47.294088 kcal Electronic energy + Delta-G solvation = -18473.061097 eV Core-core repulsion = 15369.287918 eV Total energy + Delta-G solvation = -3103.773179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25222 -39.06810 -36.42918 -35.46293 -33.41358 -32.71948 -30.14010 -29.57563 -27.14334 -26.16868 -25.27690 -22.12613 -21.18703 -20.69432 -18.60526 -17.37280 -16.87156 -16.23124 -15.57603 -15.36116 -14.59094 -14.39849 -14.26236 -13.89416 -13.31261 -13.06462 -12.74518 -12.57899 -12.15037 -11.75914 -11.70759 -11.57900 -11.36543 -11.11849 -10.89358 -10.76844 -10.43900 -10.31573 -10.24171 -9.73005 -9.25225 -9.03166 -8.50040 -8.37314 -7.72755 -6.13659 -4.22455 1.73005 1.95412 2.66613 2.78390 3.13531 3.21576 3.29889 3.31790 3.71667 4.33237 4.58500 4.66521 4.86986 4.96847 5.07254 5.18012 5.48159 5.52703 5.60997 5.88209 6.22731 6.38769 6.66375 6.73179 6.79221 6.99018 7.30213 7.43976 7.60748 7.63660 7.93690 8.11109 8.37320 8.72699 8.89237 9.44176 10.91726 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.004045 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.827161 B = 6920.736597 C = 7179.693766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.490 3.510 15 O -0.522 6.522 16 C 0.113 3.887 17 N -0.346 5.346 18 C 0.071 3.929 19 C -0.188 4.188 20 Cl -0.051 7.051 21 C 0.053 3.947 22 N -0.246 5.246 23 H 0.094 0.906 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.182 0.818 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 -5.955 -14.366 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.065 4.065 14 C 0.274 3.726 15 O -0.398 6.398 16 C -0.011 4.011 17 N -0.128 5.128 18 C -0.077 4.077 19 C -0.227 4.227 20 Cl -0.023 7.023 21 C -0.135 4.135 22 N -0.066 5.066 23 H 0.112 0.888 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.199 0.801 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.018 -5.139 -13.656 15.430 hybrid contribution 1.284 -0.728 0.613 1.598 sum 6.302 -5.868 -13.043 15.629 Atomic orbital electron populations 1.22082 0.97997 0.99441 1.00935 1.18978 0.90978 0.94515 0.79554 0.91892 1.21325 1.32057 1.13121 0.90236 0.92159 1.24902 0.94880 0.94949 0.99026 1.69885 1.36181 1.22485 1.23781 0.86428 0.78617 0.79548 0.82715 1.19813 1.20877 1.20870 1.48251 1.48873 1.11671 1.23472 1.21679 0.98823 0.83133 1.02878 1.20163 0.80650 0.87696 0.84131 1.90753 1.57224 1.16257 1.75545 1.21771 0.96783 0.90394 0.92191 1.47943 1.10055 1.14630 1.40131 1.22178 0.87030 1.00208 0.98260 1.20682 0.90873 0.98680 1.12414 1.98305 1.25762 1.96997 1.81257 1.23885 0.89907 1.00344 0.99314 1.77676 1.22646 0.92645 1.13650 0.88766 0.96931 0.95098 0.92634 0.93455 0.93022 0.89584 0.85959 0.86958 0.80132 0.79421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.86 7.99 -34.44 -0.28 -14.13 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -11.80 2.75 -175.26 -0.48 -12.28 16 13 C 0.08 1.16 9.24 59.85 0.55 1.71 16 14 C 0.49 9.65 7.71 -10.99 -0.08 9.57 16 15 O -0.52 -12.95 15.05 5.56 0.08 -12.87 16 16 C 0.11 1.53 5.54 -5.19 -0.03 1.50 16 17 N -0.35 -5.21 3.40 -62.51 -0.21 -5.42 16 18 C 0.07 0.89 11.43 -17.16 -0.20 0.69 16 19 C -0.19 -2.44 6.65 -39.97 -0.27 -2.71 16 20 Cl -0.05 -0.57 29.30 -51.86 -1.52 -2.09 16 21 C 0.05 0.75 12.02 -17.33 -0.21 0.55 16 22 N -0.25 -4.23 11.66 30.64 0.36 -3.87 16 23 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.55 6.44 -51.93 -0.33 0.21 16 29 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 30 H 0.12 1.17 7.33 -51.93 -0.38 0.79 16 31 H 0.11 1.23 8.11 -51.93 -0.42 0.81 16 32 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 299.40 15.07 4.51 4.51 Total: -1.00 -33.20 299.40 -5.89 -39.09 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.78 Total: -0.50 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.45 Total: 2.01 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.29 Total: -45.72 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.52 Total: -2.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.20 -5.89 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287805429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.383 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds