Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21281 * 120.00208 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00070 * 180.02562 * 14 12 2 17 17 N 1.46501 * 109.47232 * 179.97438 * 16 14 12 18 18 C 1.35048 * 126.03894 * 124.99907 * 17 16 14 19 19 C 1.35367 * 107.73154 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 126.04936 * 179.97438 * 19 18 17 21 21 C 1.39932 * 107.90800 * 359.97438 * 19 18 17 22 22 N 1.30856 * 108.21259 * 359.76042 * 21 19 18 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 28 28 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 29 29 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 30 30 H 1.08999 * 109.47401 * 300.00043 * 16 14 12 31 31 H 1.09002 * 109.47014 * 60.00321 * 16 14 12 32 32 H 1.07998 * 126.13150 * 359.94502 * 18 17 16 33 33 H 1.07997 * 125.89449 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2950 -0.7459 -3.3141 17 7 4.1084 0.1750 -4.1119 18 6 5.3785 -0.0360 -4.5196 19 6 5.7691 1.0483 -5.2296 20 17 7.3204 1.2770 -5.9744 21 6 4.7013 1.9522 -5.2570 22 7 3.7039 1.4273 -4.5921 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7091 1.1614 3.4844 27 1 0.7375 -2.1444 -1.9994 28 1 2.4628 -2.5819 -1.9865 29 1 1.5295 -2.5969 -0.4708 30 1 3.9003 -1.6025 -3.0179 31 1 2.4469 -1.0880 -3.9073 32 1 5.9755 -0.9125 -4.3153 33 1 4.6991 2.9149 -5.7465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287805429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = 24.705448 kcal Electronic energy + Delta-G solvation = -18474.040614 eV Core-core repulsion = 15369.287918 eV Total energy + Delta-G solvation = -3104.752696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29964 -40.58583 -37.37369 -37.14511 -34.96554 -34.18582 -31.60795 -30.92138 -28.32317 -27.50338 -27.29883 -23.60105 -22.19434 -22.06462 -20.09533 -18.58396 -18.47834 -17.84470 -17.11464 -16.72959 -16.17086 -15.67465 -15.36289 -15.16034 -14.66863 -14.32013 -14.14279 -14.00010 -13.54597 -13.38393 -13.07026 -12.86351 -12.74441 -12.67064 -12.60576 -12.31838 -12.21458 -12.10737 -11.43587 -11.19597 -11.00207 -10.57356 -10.36555 -9.40025 -9.34784 -8.15815 -6.32725 0.72223 1.00562 1.40752 1.42744 1.53580 1.64696 1.70330 1.80521 2.26848 2.46386 3.12936 3.51841 3.67770 3.85012 4.03292 4.13666 4.48277 4.52743 4.63835 4.74245 4.78438 4.87952 5.04873 5.08449 5.37802 5.46339 5.54645 5.65234 5.81688 6.02540 6.14514 6.57087 6.76358 6.76789 7.28724 7.44081 8.88973 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.004045 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.827161 B = 6920.736597 C = 7179.693766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.002 0.998 4 C -0.536 4.536 5 H 0.068 0.932 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.478 3.522 15 O -0.587 6.587 16 C 0.124 3.876 17 N -0.359 5.359 18 C 0.081 3.919 19 C -0.201 4.201 20 Cl -0.037 7.037 21 C 0.050 3.950 22 N -0.304 5.304 23 H 0.065 0.935 24 H 0.016 0.984 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.144 0.856 32 H 0.223 0.777 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 -8.986 -15.356 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.086 0.914 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.216 1.216 11 H -0.201 1.201 12 N -0.328 5.328 13 C -0.070 4.070 14 C 0.265 3.735 15 O -0.468 6.468 16 C 0.001 3.999 17 N -0.141 5.141 18 C -0.066 4.066 19 C -0.240 4.240 20 Cl -0.009 7.009 21 C -0.138 4.138 22 N -0.125 5.125 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.190 0.810 31 H 0.161 0.839 32 H 0.240 0.760 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.210 -8.224 -14.682 17.938 hybrid contribution 0.954 0.252 0.860 1.309 sum 7.165 -7.972 -13.821 17.491 Atomic orbital electron populations 1.21864 0.97223 1.00240 0.99693 1.18495 0.91521 0.92039 0.81831 0.98010 1.21623 1.31803 1.13114 0.90871 0.91421 1.25784 0.95100 0.95622 1.02237 1.70045 1.37481 1.24038 1.24339 0.85383 0.78176 0.78520 0.78783 1.18351 1.21553 1.20107 1.48216 1.48788 1.13714 1.22098 1.22015 1.01888 0.79878 1.03258 1.21288 0.79495 0.87241 0.85464 1.90723 1.59407 1.19362 1.77264 1.21936 0.98742 0.90139 0.89108 1.48093 1.11099 1.14370 1.40543 1.22868 0.86099 1.01067 0.96562 1.20841 0.91353 0.98764 1.13002 1.98308 1.24558 1.96987 1.81041 1.24294 0.89933 1.01109 0.98432 1.77605 1.24661 0.94555 1.15637 0.91664 0.96504 0.93039 0.92740 0.91320 0.87922 0.91006 0.81040 0.83873 0.76024 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.97 71.98 0.65 -5.65 16 2 C 0.26 13.45 2.64 44.25 0.12 13.57 16 3 H 0.00 0.12 6.90 -2.39 -0.02 0.10 16 4 C -0.54 -28.24 7.99 25.60 0.20 -28.03 16 5 H 0.07 3.38 7.33 -2.91 -0.02 3.36 16 6 C 0.01 0.65 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 8 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 12 N -0.60 -23.30 2.75 -826.78 -2.28 -25.58 16 13 C 0.07 1.84 9.24 127.77 1.18 3.02 16 14 C 0.48 18.52 7.71 87.66 0.68 19.20 16 15 O -0.59 -30.25 15.05 -3.03 -0.05 -30.29 16 16 C 0.12 2.92 5.54 85.63 0.47 3.39 16 17 N -0.36 -10.05 3.40 -351.67 -1.19 -11.25 16 18 C 0.08 1.78 11.43 83.53 0.95 2.74 16 19 C -0.20 -4.87 6.65 22.02 0.15 -4.72 16 20 Cl -0.04 -0.76 29.30 -2.72 -0.08 -0.84 16 21 C 0.05 1.38 12.02 85.25 1.02 2.41 16 22 N -0.30 -10.41 11.66 -56.97 -0.66 -11.08 16 23 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 2.18 7.67 -2.39 -0.02 2.17 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.59 6.44 -2.39 -0.02 1.58 16 29 H 0.07 2.09 7.02 -2.39 -0.02 2.07 16 30 H 0.17 2.26 7.33 -2.39 -0.02 2.25 16 31 H 0.14 2.50 8.11 -2.39 -0.02 2.48 16 32 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.21 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -78.11 299.40 5.01 -73.10 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.12 Total: 7.53 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.87 Total: 7.02 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.89 Total: -100.78 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -78.11 5.01 -73.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287805429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.810 kcal (2) G-P(sol) polarization free energy of solvation -78.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds