Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 N 1.46498 * 109.47143 * 179.97438 * 3 2 1 5 5 C 1.37088 * 120.00111 * 264.53778 * 4 3 2 6 6 H 1.08003 * 119.99929 * 146.01633 * 5 4 3 7 7 C 1.38957 * 120.00350 * 326.02206 * 5 4 3 8 8 N 1.31411 * 119.99790 * 337.79976 * 7 5 4 9 9 Si 1.86802 * 120.00072 * 157.80094 * 7 5 4 10 10 H 1.48498 * 109.47361 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46838 * 120.00086 * 9 7 5 12 12 H 1.48499 * 109.46979 * 239.99729 * 9 7 5 13 13 C 1.34771 * 119.99896 * 84.54321 * 4 3 2 14 14 O 1.21295 * 120.00237 * 359.97438 * 13 4 3 15 15 C 1.50698 * 120.00347 * 179.97438 * 13 4 3 16 16 N 1.46504 * 109.47422 * 179.97438 * 15 13 4 17 17 C 1.35041 * 126.03425 * 125.00358 * 16 15 13 18 18 C 1.35375 * 107.72554 * 179.97438 * 17 16 15 19 19 Cl 1.73598 * 126.04777 * 179.97438 * 18 17 16 20 20 C 1.39930 * 107.90710 * 359.97438 * 18 17 16 21 21 N 1.30849 * 108.21176 * 359.75563 * 20 18 17 22 22 H 1.09007 * 109.46862 * 59.99737 * 1 2 3 23 23 H 1.08993 * 109.47371 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46985 * 300.00401 * 1 2 3 25 25 H 1.08998 * 109.46985 * 239.99598 * 2 1 3 26 26 H 1.09007 * 109.46862 * 120.00263 * 2 1 3 27 27 H 1.08998 * 109.46830 * 60.00009 * 3 2 1 28 28 H 1.08999 * 109.46937 * 300.00100 * 3 2 1 29 29 H 0.96996 * 119.99936 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47181 * 300.00194 * 15 13 4 31 31 H 1.08997 * 109.47127 * 59.99780 * 15 13 4 32 32 H 1.07996 * 126.14030 * 359.93415 * 17 16 15 33 33 H 1.08002 * 125.89221 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1901 1.5555 1.1827 6 1 5.1317 1.0426 1.3124 7 6 3.6729 2.3299 2.2141 8 7 2.8022 3.2783 1.9506 9 14 4.2155 2.0230 3.9750 10 1 5.1952 0.9074 4.0039 11 1 4.8473 3.2515 4.5195 12 1 3.0347 1.6656 4.8016 13 6 4.1794 1.3311 -1.1610 14 8 3.5734 1.2307 -2.2069 15 6 5.6864 1.3316 -1.1605 16 7 6.1753 1.1993 -2.5352 17 6 7.0306 2.0381 -3.1584 18 6 7.2301 1.5671 -4.4118 19 17 8.2474 2.2834 -5.6224 20 6 6.4712 0.4007 -4.5589 21 7 5.8433 0.1766 -3.4330 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 2.4410 3.8186 2.6706 30 1 6.0493 2.2666 -0.7338 31 1 6.0498 0.4949 -0.5639 32 1 7.4753 2.9258 -2.7334 33 1 6.4170 -0.2116 -5.4470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287934083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = 21.666449 kcal Electronic energy + Delta-G solvation = -18604.253922 eV Core-core repulsion = 15499.369445 eV Total energy + Delta-G solvation = -3104.884477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22932 -40.39955 -37.35594 -37.03638 -34.73176 -34.04551 -33.14977 -31.00230 -28.84808 -27.42060 -26.01512 -22.92184 -22.13663 -22.04644 -21.02098 -19.12104 -18.23622 -17.69710 -16.67571 -16.37597 -16.16850 -15.74488 -15.38123 -15.23566 -15.02756 -14.38351 -14.31261 -14.06736 -13.47125 -13.26672 -13.16546 -12.95227 -12.65713 -12.60215 -12.40168 -12.29283 -12.02316 -12.00065 -11.55993 -11.39978 -11.08866 -10.79103 -10.25077 -9.54638 -9.34774 -8.33690 -6.08470 0.79034 1.03948 1.41699 1.52892 1.63802 1.68772 1.84697 1.94482 2.30290 2.84087 3.05252 3.72786 3.87900 4.06301 4.14493 4.25568 4.27542 4.33628 4.52687 4.59393 4.68411 4.76399 4.94754 5.05888 5.18252 5.32010 5.41894 5.44616 5.53346 5.85817 5.94003 6.38225 6.64037 7.08580 7.50560 7.95734 8.68453 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.004984 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.159306 B = 5616.672323 C = 6510.818196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.119 3.881 4 N -0.443 5.443 5 C -0.365 4.365 6 H 0.108 0.892 7 C 0.010 3.990 8 N -0.886 5.886 9 Si 0.982 3.018 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.441 3.559 14 O -0.618 6.618 15 C 0.140 3.860 16 N -0.353 5.353 17 C 0.073 3.927 18 C -0.199 4.199 19 Cl -0.036 7.036 20 C 0.048 3.952 21 N -0.300 5.300 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.026 0.974 29 H 0.274 0.726 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.212 0.788 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 -2.102 -3.248 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.005 4.005 4 N -0.161 5.161 5 C -0.492 4.492 6 H 0.126 0.874 7 C -0.194 4.194 8 N -0.522 5.522 9 Si 0.805 3.195 10 H -0.178 1.178 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.229 3.771 14 O -0.504 6.504 15 C 0.016 3.984 16 N -0.134 5.134 17 C -0.075 4.075 18 C -0.237 4.237 19 Cl -0.008 7.008 20 C -0.139 4.139 21 N -0.120 5.120 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.229 0.771 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.040 -2.698 -2.950 7.243 hybrid contribution 0.489 0.753 0.208 0.922 sum 6.529 -1.945 -2.743 7.344 Atomic orbital electron populations 1.21608 0.93726 1.02331 1.01698 1.21718 0.97235 0.96980 1.00379 1.21403 0.81286 0.96145 1.01663 1.43703 1.05249 1.61988 1.05155 1.19901 1.08539 1.30086 0.90673 0.87425 1.26148 0.96624 0.92656 1.03962 1.70042 1.30807 1.16801 1.34591 0.85057 0.78429 0.78652 0.77346 1.17822 1.20492 1.20761 1.20913 0.90399 0.82039 0.83770 1.90586 1.70616 1.56599 1.32636 1.21479 0.92691 1.06930 0.77308 1.48164 1.34208 1.19134 1.11882 1.22794 0.94414 0.97476 0.92806 1.20766 1.08747 1.01384 0.92843 1.98293 1.66322 1.82781 1.53389 1.24312 0.94876 0.96935 0.97767 1.77556 1.22038 1.11775 1.00670 0.93201 0.90973 0.92302 0.94589 0.92311 0.88517 0.95558 0.91613 0.83786 0.86364 0.77093 0.77311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.91 71.98 0.71 -3.77 16 2 C -0.12 -5.12 6.22 30.59 0.19 -4.93 16 3 C 0.12 5.67 4.90 86.38 0.42 6.09 16 4 N -0.44 -21.35 2.56 -635.55 -1.63 -22.97 16 5 C -0.37 -16.71 8.70 84.04 0.73 -15.98 16 6 H 0.11 4.46 6.97 -2.91 -0.02 4.44 16 7 C 0.01 0.47 4.92 84.93 0.42 0.89 16 8 N -0.89 -43.92 11.34 21.67 0.25 -43.68 16 9 Si 0.98 35.91 29.61 68.60 2.03 37.94 16 10 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 11 H -0.28 -10.13 7.11 99.48 0.71 -9.43 16 12 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 13 C 0.44 20.90 7.63 87.66 0.67 21.56 16 14 O -0.62 -33.60 15.39 -3.08 -0.05 -33.65 16 15 C 0.14 5.12 5.65 85.63 0.48 5.60 16 16 N -0.35 -12.78 3.40 -351.67 -1.19 -13.98 16 17 C 0.07 2.14 11.43 83.54 0.95 3.10 16 18 C -0.20 -5.74 6.65 22.02 0.15 -5.60 16 19 Cl -0.04 -0.85 29.30 -2.72 -0.08 -0.93 16 20 C 0.05 1.52 12.02 85.25 1.02 2.55 16 21 N -0.30 -11.77 11.66 -56.98 -0.66 -12.43 16 22 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.10 4.83 5.35 -2.39 -0.01 4.82 16 28 H 0.03 1.35 7.59 -2.39 -0.02 1.33 16 29 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 30 H 0.14 4.55 8.03 -2.39 -0.02 4.53 16 31 H 0.12 3.95 7.64 -2.39 -0.02 3.93 16 32 H 0.21 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.21 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -62.99 303.32 5.54 -57.45 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.12 Total: 22.73 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.75 Total: 9.52 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -3.24 Total: -93.06 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.05 Total: -33.65 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -62.99 5.54 -57.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287934083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.115 kcal (2) G-P(sol) polarization free energy of solvation -62.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds