Wall clock time and date at job start Mon Mar 30 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47107 * 240.00372 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.35048 * 126.03665 * 124.99929 * 16 15 13 18 18 C 1.35374 * 107.73000 * 179.97438 * 17 16 15 19 19 Cl 1.73604 * 126.04389 * 179.97438 * 18 17 16 20 20 C 1.39921 * 107.90738 * 359.97438 * 18 17 16 21 21 N 1.30855 * 108.21413 * 359.75819 * 20 18 17 22 22 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 24 24 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 25 25 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 28 28 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.08005 * 126.13346 * 359.94591 * 17 16 15 33 33 H 1.07999 * 125.89618 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1005 -0.0005 13 6 1.9832 -7.3712 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0007 16 7 2.2300 -9.7854 -0.0002 17 6 2.3749 -10.7868 -0.8946 18 6 1.5216 -11.7781 -0.5454 19 17 1.3183 -13.2899 -1.3741 20 6 0.8325 -11.3685 0.6014 21 7 1.2604 -10.1769 0.9319 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5570 0.8897 25 1 2.8720 -3.6042 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0450 -0.8896 28 1 0.8540 -5.0446 0.8903 29 1 3.3861 -5.9233 -0.0016 30 1 3.5891 -8.4588 -0.8907 31 1 3.5892 -8.4590 0.8893 32 1 3.0502 -10.7951 -1.7375 33 1 0.0801 -11.9390 1.1256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289266819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:59 Heat of formation + Delta-G solvation = 25.762658 kcal Electronic energy + Delta-G solvation = -17283.935140 eV Core-core repulsion = 14179.228288 eV Total energy + Delta-G solvation = -3104.706852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56120 -39.49390 -36.65498 -35.56147 -33.65516 -33.32500 -31.33096 -30.30451 -28.16813 -26.32375 -23.27854 -21.74949 -21.47036 -20.85400 -20.04781 -17.80841 -17.30709 -16.44914 -15.99937 -15.48800 -15.06860 -14.73849 -14.54527 -14.33924 -14.10996 -13.59602 -13.45372 -12.77625 -12.33186 -11.98403 -11.91159 -11.74902 -11.61273 -10.92578 -10.81462 -10.71770 -10.66925 -10.26243 -9.93841 -9.74055 -9.43113 -9.18567 -8.94768 -8.67597 -8.41245 -6.05758 -4.09460 1.41987 1.65156 2.39227 2.47528 2.51573 3.13394 3.28892 3.34125 3.35672 4.22214 4.37121 4.40386 4.55873 4.65617 4.72581 5.18474 5.29877 5.33230 5.60124 5.68085 6.06577 6.10502 6.31320 6.43082 6.50749 6.72083 6.91898 7.30096 7.48160 7.57907 7.69942 7.92164 8.15942 8.32897 8.96947 9.54955 11.05457 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.069562 B = 0.002417 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.421106 B =11579.890902 C =11702.030683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.723 5.723 13 C 0.492 3.508 14 O -0.513 6.513 15 C 0.115 3.885 16 N -0.353 5.353 17 C 0.072 3.928 18 C -0.186 4.186 19 Cl -0.046 7.046 20 C 0.058 3.942 21 N -0.248 5.248 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.399 0.601 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.184 0.816 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.605 -23.358 -1.809 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.375 5.375 13 C 0.275 3.725 14 O -0.387 6.387 15 C -0.010 4.010 16 N -0.135 5.135 17 C -0.075 4.075 18 C -0.224 4.224 19 Cl -0.018 7.018 20 C -0.130 4.130 21 N -0.068 5.068 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.233 0.767 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.201 0.799 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.512 -22.397 -1.048 23.647 hybrid contribution 0.970 0.297 -0.731 1.251 sum 8.483 -22.100 -1.778 23.739 Atomic orbital electron populations 1.69954 1.06077 1.26885 1.50295 1.25038 0.94870 0.99346 0.95216 0.86630 0.79554 0.83045 0.78587 1.20231 1.21245 1.20227 1.21147 0.92933 0.90915 1.51277 0.92681 1.19027 0.93839 0.90825 0.97698 1.21895 0.99797 0.93205 1.00924 1.21690 0.91761 0.84806 1.02194 1.46127 1.11021 1.05487 1.74844 1.20393 0.89830 0.84123 0.78143 1.90809 1.16096 1.84201 1.47633 1.21614 0.93133 0.79673 1.06596 1.47842 1.31353 1.13092 1.21171 1.22205 1.00867 0.88173 0.96271 1.20732 1.07468 0.92560 1.01670 1.98323 1.97014 1.28840 1.77630 1.23934 1.00306 0.93194 0.95562 1.77678 1.03821 1.12686 1.12650 0.92807 0.96274 0.96256 0.92628 0.92660 0.91667 0.91564 0.76670 0.85407 0.86343 0.79933 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.96 5.67 -4.04 -0.02 1.93 16 12 N -0.72 -8.94 5.56 -60.30 -0.33 -9.28 16 13 C 0.49 6.48 7.86 -10.98 -0.09 6.40 16 14 O -0.51 -9.50 15.72 5.56 0.09 -9.41 16 15 C 0.12 0.94 6.99 -5.19 -0.04 0.91 16 16 N -0.35 -3.89 3.40 -62.50 -0.21 -4.10 16 17 C 0.07 0.65 11.43 -17.16 -0.20 0.46 16 18 C -0.19 -1.89 6.65 -39.97 -0.27 -2.15 16 19 Cl -0.05 -0.41 29.30 -51.86 -1.52 -1.93 16 20 C 0.06 0.65 12.02 -17.34 -0.21 0.45 16 21 N -0.25 -3.40 11.66 30.64 0.36 -3.04 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.40 3.50 8.47 -40.82 -0.35 3.15 16 30 H 0.13 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -35.30 310.92 -6.84 -42.14 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.11 Total: -2.28 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.51 Total: -7.11 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.55 Total: -42.27 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.30 -6.84 -42.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289266819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.901 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds