Wall clock time and date at job start Mon Mar 30 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47107 * 240.00372 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.35048 * 126.03665 * 124.99929 * 16 15 13 18 18 C 1.35374 * 107.73000 * 179.97438 * 17 16 15 19 19 Cl 1.73604 * 126.04389 * 179.97438 * 18 17 16 20 20 C 1.39921 * 107.90738 * 359.97438 * 18 17 16 21 21 N 1.30855 * 108.21413 * 359.75819 * 20 18 17 22 22 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 24 24 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 25 25 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 26 26 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 27 27 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 28 28 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 32 32 H 1.08005 * 126.13346 * 359.94591 * 17 16 15 33 33 H 1.07999 * 125.89618 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1005 -0.0005 13 6 1.9832 -7.3712 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0007 16 7 2.2300 -9.7854 -0.0002 17 6 2.3749 -10.7868 -0.8946 18 6 1.5216 -11.7781 -0.5454 19 17 1.3183 -13.2899 -1.3741 20 6 0.8325 -11.3685 0.6014 21 7 1.2604 -10.1769 0.9319 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5570 0.8897 25 1 2.8720 -3.6042 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 0.8534 -5.0450 -0.8896 28 1 0.8540 -5.0446 0.8903 29 1 3.3861 -5.9233 -0.0016 30 1 3.5891 -8.4588 -0.8907 31 1 3.5892 -8.4590 0.8893 32 1 3.0502 -10.7951 -1.7375 33 1 0.0801 -11.9390 1.1256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289266819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:59 Heat of formation + Delta-G solvation = 0.437628 kcal Electronic energy + Delta-G solvation = -17285.033315 eV Core-core repulsion = 14179.228288 eV Total energy + Delta-G solvation = -3105.805028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.32227 -40.58559 -37.36268 -37.00052 -35.22448 -34.39222 -33.01454 -31.07966 -29.37163 -27.76333 -24.96533 -22.71155 -22.34399 -22.18741 -21.21769 -18.74284 -18.37578 -18.22838 -16.98917 -16.74426 -16.39631 -16.13950 -15.64377 -15.28874 -15.15740 -14.61809 -14.24357 -14.20382 -13.77643 -13.75483 -13.27000 -12.72365 -12.65678 -12.56237 -12.42552 -12.34202 -11.67583 -11.65087 -11.45352 -11.28729 -11.11046 -10.55604 -10.48642 -10.15270 -9.41937 -8.20075 -6.31983 0.69024 0.97829 1.41736 1.44734 1.51423 1.52599 1.61911 1.77523 2.15823 2.42177 3.13751 3.57146 3.67888 3.87108 4.06728 4.14961 4.16606 4.20962 4.51937 4.53453 4.62572 4.92819 4.96684 5.16556 5.34353 5.38703 5.51452 5.69489 5.78907 5.83426 6.20788 6.51599 6.53580 6.86045 7.20121 7.37988 8.91890 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.069562 B = 0.002417 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.421106 B =11579.890902 C =11702.030683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.132 3.868 12 N -0.707 5.707 13 C 0.489 3.511 14 O -0.574 6.574 15 C 0.120 3.880 16 N -0.361 5.361 17 C 0.085 3.915 18 C -0.204 4.204 19 Cl -0.039 7.039 20 C 0.050 3.950 21 N -0.303 5.303 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.012 1.012 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.422 0.578 30 H 0.182 0.818 31 H 0.148 0.852 32 H 0.225 0.775 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.837 -23.800 -2.562 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.088 0.912 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.008 3.992 12 N -0.361 5.361 13 C 0.275 3.725 14 O -0.452 6.452 15 C -0.004 4.004 16 N -0.143 5.143 17 C -0.062 4.062 18 C -0.242 4.242 19 Cl -0.011 7.011 20 C -0.137 4.137 21 N -0.123 5.123 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.007 0.993 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.199 0.801 31 H 0.166 0.834 32 H 0.242 0.758 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.810 -22.853 -1.796 25.344 hybrid contribution -0.064 0.382 -0.515 0.645 sum 10.746 -22.471 -2.311 25.015 Atomic orbital electron populations 1.70114 1.08040 1.27869 1.51691 1.26061 0.95740 1.03699 0.94810 0.85453 0.78153 0.77807 0.79343 1.18848 1.21380 1.18964 1.21663 0.93832 0.91907 1.50446 0.91249 1.18958 0.94543 0.93245 0.94874 1.21586 0.98330 0.91414 1.02446 1.21183 0.92006 0.85711 1.00333 1.45822 1.11453 1.04460 1.74372 1.21324 0.89965 0.85042 0.76196 1.90794 1.19104 1.85080 1.50259 1.21947 0.91541 0.76306 1.10598 1.48080 1.31139 1.14099 1.21025 1.22872 1.00277 0.86933 0.96141 1.20904 1.08089 0.93427 1.01829 1.98321 1.97052 1.28416 1.77346 1.24270 1.00421 0.92881 0.96131 1.77599 1.05920 1.13949 1.14876 0.92847 0.99136 0.99313 0.91119 0.90836 0.93492 0.93853 0.74045 0.80092 0.83416 0.75848 0.78045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.29 21.45 0.28 -56.85 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.10 -3.61 5.27 30.60 0.16 -3.45 16 11 C 0.13 4.40 5.67 86.38 0.49 4.89 16 12 N -0.71 -16.13 5.56 -463.06 -2.57 -18.70 16 13 C 0.49 12.11 7.86 87.66 0.69 12.80 16 14 O -0.57 -21.53 15.72 -3.03 -0.05 -21.57 16 15 C 0.12 1.53 6.99 85.63 0.60 2.13 16 16 N -0.36 -7.15 3.40 -351.66 -1.19 -8.35 16 17 C 0.08 1.30 11.43 83.54 0.95 2.25 16 18 C -0.20 -3.86 6.65 22.02 0.15 -3.71 16 19 Cl -0.04 -0.65 29.30 -2.72 -0.08 -0.73 16 20 C 0.05 1.12 12.02 85.25 1.02 2.15 16 21 N -0.30 -8.21 11.66 -56.98 -0.66 -8.88 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.42 5.85 8.47 -92.71 -0.79 5.07 16 30 H 0.18 0.36 8.07 -2.39 -0.02 0.34 16 31 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -80.88 310.92 3.00 -77.88 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.34 Total: 2.91 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 4.91 Total: -10.89 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.15 Total: -92.78 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -80.88 3.00 -77.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289266819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.315 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds