Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37095 * 120.00326 * 2 1 4 4 H 1.08000 * 119.99907 * 204.39362 * 3 2 1 5 5 C 1.38950 * 120.00257 * 24.39308 * 3 2 1 6 6 N 1.31408 * 119.99655 * 12.63896 * 5 3 2 7 7 Si 1.86795 * 120.00155 * 192.64239 * 5 3 2 8 8 H 1.48501 * 109.47083 * 89.99470 * 7 5 3 9 9 H 1.48500 * 109.47123 * 209.99785 * 7 5 3 10 10 H 1.48500 * 109.47034 * 329.99719 * 7 5 3 11 11 C 1.34777 * 119.99817 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00403 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99693 * 0.02562 * 11 2 1 14 14 O 1.42901 * 109.47021 * 179.97438 * 13 11 2 15 15 C 1.35899 * 117.00128 * 180.02562 * 14 13 11 16 16 C 1.38708 * 120.02865 * 359.72439 * 15 14 13 17 17 C 1.38377 * 119.96925 * 180.31926 * 16 15 14 18 18 F 1.35096 * 119.98326 * 179.97438 * 17 16 15 19 19 C 1.38457 * 120.02859 * 359.93386 * 17 16 15 20 20 C 1.38453 * 120.06112 * 0.04554 * 19 17 16 21 21 F 1.35107 * 119.98296 * 179.97438 * 20 19 17 22 22 C 1.38379 * 120.03232 * 359.97438 * 20 19 17 23 23 H 1.08991 * 109.47221 * 265.87125 * 1 2 3 24 24 H 1.09010 * 109.46370 * 25.86584 * 1 2 3 25 25 H 1.09002 * 109.47111 * 145.86034 * 1 2 3 26 26 H 0.97003 * 119.99870 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47235 * 60.00428 * 13 11 2 28 28 H 1.08996 * 109.47554 * 300.00062 * 13 11 2 29 29 H 1.07998 * 120.01460 * 0.25413 * 16 15 14 30 30 H 1.08002 * 119.96806 * 180.02562 * 19 17 16 31 31 H 1.07995 * 120.01441 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4347 2.2492 1.1881 7 14 2.3239 4.0072 0.1826 8 1 1.7873 4.5719 -1.0817 9 1 2.0037 4.9213 1.3083 10 1 3.7971 3.8563 0.0712 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0001 13 6 1.3852 -2.4723 0.0005 14 8 2.3137 -3.5585 0.0005 15 6 1.7943 -4.8143 0.0000 16 6 0.4192 -4.9967 0.0052 17 6 -0.1084 -6.2759 0.0114 18 9 -1.4476 -6.4538 0.0170 19 6 0.7356 -7.3735 0.0109 20 6 2.1083 -7.1929 0.0052 21 9 2.9304 -8.2650 0.0052 22 6 2.6386 -5.9148 -0.0005 23 1 -0.3633 -0.0740 1.0249 24 1 -0.3632 0.9248 -0.4484 25 1 -0.3633 -0.8506 -0.5767 26 1 0.0145 3.0518 1.5347 27 1 0.7589 -2.5302 -0.8897 28 1 0.7582 -2.5298 0.8902 29 1 -0.2393 -4.1407 0.0056 30 1 0.3227 -8.3715 0.0152 31 1 3.7094 -5.7742 -0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291435497.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -140.552836 kcal Electronic energy + Delta-G solvation = -19910.678975 eV Core-core repulsion = 16214.670710 eV Total energy + Delta-G solvation = -3696.008264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.11177 -50.08524 -41.43780 -40.13198 -38.12032 -36.67226 -33.77720 -31.80385 -31.24211 -29.69291 -27.95886 -26.19373 -24.06062 -23.76599 -21.12926 -19.99522 -18.96130 -18.44356 -18.01320 -17.56670 -17.39166 -17.14625 -16.95474 -16.82376 -16.38309 -16.32606 -15.92401 -15.51885 -15.39065 -15.05664 -14.17982 -13.82653 -13.40738 -13.33115 -13.15919 -13.10616 -12.94510 -12.73763 -12.64077 -12.39421 -12.14108 -11.92437 -11.03555 -10.46274 -9.95011 -9.74563 -9.55184 -8.39200 -6.05161 -0.18632 -0.01983 1.36503 1.41253 1.51409 1.65654 1.88529 2.25010 2.30276 2.77401 3.03335 3.05641 3.31071 3.67460 3.74285 3.82763 3.84426 4.01970 4.11977 4.14541 4.59993 4.69793 4.81191 4.90349 4.97578 4.99619 5.34836 5.41978 5.49508 5.97715 6.14581 6.43322 7.10190 7.34931 7.90465 8.63719 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.003829 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.054318 B = 7310.709897 C = 7993.397079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.452 5.452 3 C -0.348 4.348 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.891 5.891 7 Si 0.990 3.010 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.277 1.277 11 C 0.432 3.568 12 O -0.623 6.623 13 C 0.062 3.938 14 O -0.304 6.304 15 C 0.178 3.822 16 C -0.255 4.255 17 C 0.171 3.829 18 F -0.126 7.126 19 C -0.221 4.221 20 C 0.170 3.830 21 F -0.126 7.126 22 C -0.207 4.207 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.276 0.724 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 -15.117 -2.336 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.172 5.172 3 C -0.476 4.476 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.529 5.529 7 Si 0.814 3.186 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.202 1.202 11 C 0.220 3.780 12 O -0.509 6.509 13 C -0.016 4.016 14 O -0.216 6.216 15 C 0.131 3.869 16 C -0.275 4.275 17 C 0.151 3.849 18 F -0.104 7.104 19 C -0.241 4.241 20 C 0.150 3.850 21 F -0.104 7.104 22 C -0.226 4.226 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.182 0.818 30 H 0.191 0.809 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.600 -14.941 -2.235 16.112 hybrid contribution 0.188 0.852 0.071 0.875 sum -5.412 -14.089 -2.164 15.247 Atomic orbital electron populations 1.21624 0.78679 1.01626 1.01270 1.43732 1.07063 1.03948 1.62414 1.19616 1.00681 0.85703 1.41565 0.91081 1.26072 0.96962 1.02873 0.93997 1.70034 1.19441 1.31052 1.32377 0.84980 0.78279 0.76869 0.78519 1.18781 1.19759 1.20247 1.20473 0.87977 0.85741 0.83767 1.90528 1.16090 1.87662 1.56665 1.22582 0.90860 0.82853 1.05312 1.86197 1.35925 1.11991 1.87503 1.18475 0.91231 0.84386 0.92762 1.21423 0.94638 0.98669 1.12727 1.16841 0.77279 0.92616 0.98163 1.91550 1.29415 1.96109 1.93358 1.21053 0.91216 1.01070 1.10743 1.16696 0.87266 0.82262 0.98737 1.91549 1.71932 1.53480 1.93447 1.20427 1.02007 0.89214 1.10992 0.93088 0.91871 0.90734 0.91415 0.86624 0.87202 0.81816 0.80940 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.43 8.44 127.77 1.08 5.51 16 2 N -0.45 -22.46 3.01 -658.89 -1.98 -24.45 16 3 C -0.35 -19.37 9.24 84.04 0.78 -18.60 16 4 H 0.07 4.27 7.45 -2.91 -0.02 4.25 16 5 C 0.00 0.19 5.04 84.93 0.43 0.62 16 6 N -0.89 -45.30 10.83 21.66 0.23 -45.06 16 7 Si 0.99 41.26 29.57 68.60 2.03 43.29 16 8 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 C 0.43 20.87 7.70 87.66 0.68 21.55 16 12 O -0.62 -36.31 16.21 15.97 0.26 -36.05 16 13 C 0.06 2.08 3.83 71.24 0.27 2.35 16 14 O -0.30 -10.81 9.67 -73.38 -0.71 -11.52 16 15 C 0.18 4.90 6.68 22.49 0.15 5.06 16 16 C -0.26 -5.74 9.01 22.42 0.20 -5.53 16 17 C 0.17 3.46 7.30 22.36 0.16 3.63 16 18 F -0.13 -2.52 17.27 44.97 0.78 -1.74 16 19 C -0.22 -4.09 10.00 22.37 0.22 -3.87 16 20 C 0.17 3.63 7.30 22.35 0.16 3.79 16 21 F -0.13 -2.66 17.27 44.97 0.78 -1.88 16 22 C -0.21 -5.18 9.96 22.42 0.22 -4.95 16 23 H 0.05 2.07 7.83 -2.39 -0.02 2.05 16 24 H 0.06 2.73 6.80 -2.38 -0.02 2.71 16 25 H 0.07 2.20 6.61 -2.39 -0.02 2.18 16 26 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 27 H 0.12 3.06 6.93 -2.39 -0.02 3.04 16 28 H 0.11 3.13 7.62 -2.39 -0.02 3.11 16 29 H 0.16 3.13 6.30 -2.91 -0.02 3.11 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -67.02 283.62 6.92 -60.10 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.18 Total: 7.77 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.36 Total: 9.54 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.75 Total: -69.51 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.45 Total: -47.57 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.55 Total: -3.63 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -67.02 6.92 -60.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291435497.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.449 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds