Wall clock time and date at job start Mon Mar 30 2020 00:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99870 * 2 1 4 4 C 1.50706 * 109.46701 * 180.02562 * 3 2 1 5 5 N 1.30163 * 121.06987 * 89.97537 * 4 3 2 6 6 S 1.69953 * 105.74630 * 180.02562 * 5 4 3 7 7 C 1.72306 * 94.55963 * 359.97438 * 6 5 4 8 8 N 1.38788 * 127.49983 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99764 * 0.02562 * 8 7 6 10 10 O 1.21273 * 120.00469 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72581 * 9 8 7 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99715 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46986 * 89.99874 * 17 15 13 19 19 H 1.48499 * 109.47352 * 210.00027 * 17 15 13 20 20 H 1.48497 * 109.46659 * 329.99959 * 17 15 13 21 21 N 1.31230 * 121.06171 * 270.28647 * 4 3 2 22 22 H 1.08996 * 109.47204 * 59.99595 * 1 2 3 23 23 H 1.08995 * 109.46963 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46507 * 300.00101 * 1 2 3 25 25 H 1.08994 * 109.47561 * 60.00054 * 3 2 1 26 26 H 1.09001 * 109.47309 * 299.99625 * 3 2 1 27 27 H 0.97000 * 120.00342 * 180.02562 * 8 7 6 28 28 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 29 29 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 30 30 H 1.08995 * 109.46638 * 300.00002 * 12 11 9 31 31 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 32 32 H 0.97012 * 120.00031 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.1817 1.1331 -1.1158 6 16 5.8158 1.0029 -0.6674 7 6 5.4958 1.0293 1.0255 8 7 6.4173 0.9558 2.0608 9 6 7.7325 0.8507 1.7860 10 8 8.1110 0.8208 0.6342 11 6 8.7335 0.7771 2.9102 12 6 10.1452 0.6700 2.3299 13 6 11.1461 0.5958 3.4540 14 1 10.8091 0.6228 4.4797 15 6 12.4920 0.4935 3.1730 16 7 12.9023 0.4611 1.9239 17 14 13.7329 0.4022 4.5664 18 1 13.9560 -1.0181 4.9382 19 1 15.0162 1.0063 4.1268 20 1 13.2127 1.1458 5.7418 21 7 4.1876 1.1271 1.1232 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 6.1147 0.9801 2.9821 28 1 8.6595 1.6762 3.5221 29 1 8.5260 -0.0987 3.5248 30 1 10.2192 -0.2290 1.7180 31 1 10.3527 1.5459 1.7152 32 1 13.8493 0.3887 1.7262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291882423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:07 Heat of formation + Delta-G solvation = -28.827955 kcal Electronic energy + Delta-G solvation = -17489.402405 eV Core-core repulsion = 14384.372032 eV Total energy + Delta-G solvation = -3105.030372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61561 -39.81036 -37.88183 -35.25384 -33.72328 -31.95784 -31.02564 -29.22815 -26.63601 -26.11633 -24.11787 -22.09891 -21.05472 -19.94323 -18.61148 -17.52854 -17.05330 -16.94186 -15.94568 -15.88992 -15.78201 -15.69733 -14.64650 -14.53801 -13.89216 -13.35984 -12.87073 -12.76182 -12.33716 -11.92678 -11.75773 -11.66854 -11.44455 -11.36597 -11.02959 -10.71257 -10.19136 -10.09847 -10.04269 -9.73524 -9.67250 -9.62931 -9.26412 -8.74216 -8.44249 -6.08094 -4.13722 0.43306 0.93932 1.74109 2.13530 2.45637 2.77399 3.27081 3.33950 3.35747 3.65116 4.17693 4.37944 4.78613 4.92074 5.00130 5.06261 5.07348 5.27666 5.34179 5.36660 5.57556 5.87277 5.88571 5.99574 6.52357 6.74229 6.92110 7.57123 7.57722 7.63371 7.87980 7.90369 8.24938 8.93162 9.51092 11.02652 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.057954 B = 0.003116 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.029514 B = 8984.843210 C = 9332.298038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.155 3.845 4 C 0.284 3.716 5 N -0.506 5.506 6 S 0.337 5.663 7 C 0.287 3.713 8 N -0.617 5.617 9 C 0.508 3.492 10 O -0.486 6.486 11 C -0.121 4.121 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.550 5.550 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.427 0.573 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 2.054 -0.801 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.074 3.926 4 C -0.007 4.007 5 N -0.342 5.342 6 S 0.474 5.526 7 C -0.089 4.089 8 N -0.268 5.268 9 C 0.297 3.703 10 O -0.355 6.355 11 C -0.161 4.161 12 C -0.003 4.003 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.283 5.283 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.266 0.734 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.423 1.812 -2.897 20.707 hybrid contribution -0.157 0.181 2.136 2.150 sum -20.580 1.993 -0.760 20.690 Atomic orbital electron populations 1.22783 0.80085 1.03182 1.00251 1.87948 1.20196 1.26439 1.95508 1.20689 0.83648 0.85912 1.02393 1.22466 0.98044 0.97581 0.82607 1.77286 1.02558 1.27838 1.26534 1.85994 1.06712 1.64278 0.95596 1.25228 0.90150 0.95822 0.97667 1.43477 1.05052 1.70186 1.08134 1.22534 0.80575 0.73806 0.93411 1.90697 1.77261 1.45270 1.22253 1.22003 0.95763 1.03828 0.94465 1.18991 0.85888 0.99033 0.96375 1.21127 0.91355 1.51853 0.92659 0.92364 1.25015 0.98629 0.95054 0.95559 1.69985 1.15507 1.49398 1.17668 0.86553 0.80773 0.78246 0.82169 1.20586 1.21157 1.19825 1.67271 1.03223 1.27109 1.30727 0.93710 0.89264 0.93662 0.90242 0.90369 0.73429 0.88787 0.88790 0.95393 0.95392 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.51 10.69 -35.23 -0.38 -4.89 16 3 C 0.16 1.68 6.47 36.01 0.23 1.92 16 4 C 0.28 4.13 7.19 -159.05 -1.14 2.98 16 5 N -0.51 -7.94 12.15 29.54 0.36 -7.58 16 6 S 0.34 5.42 21.17 -107.50 -2.28 3.14 16 7 C 0.29 4.38 8.51 -85.96 -0.73 3.65 16 8 N -0.62 -8.36 5.40 -12.41 -0.07 -8.42 16 9 C 0.51 8.46 7.79 -10.98 -0.09 8.38 16 10 O -0.49 -9.79 13.74 5.56 0.08 -9.71 16 11 C -0.12 -2.08 5.64 -27.88 -0.16 -2.24 16 12 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 13 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 14 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 N -0.55 -8.22 10.60 -14.48 -0.15 -8.37 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.43 4.29 8.82 -40.82 -0.36 3.93 16 28 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.26 7.30 8.31 -40.81 -0.34 6.96 16 LS Contribution 301.38 15.07 4.54 4.54 Total: -1.00 -32.88 301.38 -7.18 -40.06 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.70 Total: -3.06 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.30 Total: 3.95 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.88 Total: -49.76 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.30 Total: -14.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -2.28 Total: 3.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.88 -7.18 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291882423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.233 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds