Wall clock time and date at job start Mon Mar 30 2020 00:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99870 * 2 1 4 4 C 1.50706 * 109.46701 * 180.02562 * 3 2 1 5 5 N 1.30163 * 121.06987 * 89.97537 * 4 3 2 6 6 S 1.69953 * 105.74630 * 180.02562 * 5 4 3 7 7 C 1.72306 * 94.55963 * 359.97438 * 6 5 4 8 8 N 1.38788 * 127.49983 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99764 * 0.02562 * 8 7 6 10 10 O 1.21273 * 120.00469 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72581 * 9 8 7 12 12 C 1.53004 * 109.47208 * 180.27843 * 11 9 8 13 13 C 1.50700 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00083 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99715 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00278 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46986 * 89.99874 * 17 15 13 19 19 H 1.48499 * 109.47352 * 210.00027 * 17 15 13 20 20 H 1.48497 * 109.46659 * 329.99959 * 17 15 13 21 21 N 1.31230 * 121.06171 * 270.28647 * 4 3 2 22 22 H 1.08996 * 109.47204 * 59.99595 * 1 2 3 23 23 H 1.08995 * 109.46963 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46507 * 300.00101 * 1 2 3 25 25 H 1.08994 * 109.47561 * 60.00054 * 3 2 1 26 26 H 1.09001 * 109.47309 * 299.99625 * 3 2 1 27 27 H 0.97000 * 120.00342 * 180.02562 * 8 7 6 28 28 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 29 29 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 30 30 H 1.08995 * 109.46638 * 300.00002 * 12 11 9 31 31 H 1.08998 * 109.46846 * 59.99549 * 12 11 9 32 32 H 0.97012 * 120.00031 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.1817 1.1331 -1.1158 6 16 5.8158 1.0029 -0.6674 7 6 5.4958 1.0293 1.0255 8 7 6.4173 0.9558 2.0608 9 6 7.7325 0.8507 1.7860 10 8 8.1110 0.8208 0.6342 11 6 8.7335 0.7771 2.9102 12 6 10.1452 0.6700 2.3299 13 6 11.1461 0.5958 3.4540 14 1 10.8091 0.6228 4.4797 15 6 12.4920 0.4935 3.1730 16 7 12.9023 0.4611 1.9239 17 14 13.7329 0.4022 4.5664 18 1 13.9560 -1.0181 4.9382 19 1 15.0162 1.0063 4.1268 20 1 13.2127 1.1458 5.7418 21 7 4.1876 1.1271 1.1232 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 6.1147 0.9801 2.9821 28 1 8.6595 1.6762 3.5221 29 1 8.5260 -0.0987 3.5248 30 1 10.2192 -0.2290 1.7180 31 1 10.3527 1.5459 1.7152 32 1 13.8493 0.3887 1.7262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291882423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:07 Heat of formation + Delta-G solvation = -52.754688 kcal Electronic energy + Delta-G solvation = -17490.439946 eV Core-core repulsion = 14384.372032 eV Total energy + Delta-G solvation = -3106.067913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84330 -41.08077 -38.68861 -36.54607 -35.62360 -33.41088 -32.60723 -30.09807 -28.21673 -26.99086 -25.48794 -23.64268 -22.41638 -21.20365 -19.88301 -18.82462 -18.64869 -17.80033 -17.58493 -17.12748 -16.65841 -16.51139 -16.42257 -15.89331 -15.39895 -14.44962 -14.24723 -14.22710 -13.41574 -13.32605 -12.93660 -12.88742 -12.83380 -12.79982 -12.48349 -12.28953 -11.94694 -11.68602 -11.37994 -11.20985 -10.94776 -10.89670 -10.73618 -10.54289 -9.97119 -8.16760 -6.29494 -0.78025 -0.26321 0.56979 0.95105 1.21893 1.46309 1.46995 1.53507 1.57827 2.44281 2.73004 3.18042 3.26546 3.68639 3.95279 4.13897 4.37969 4.42274 4.47300 4.50560 4.54751 4.61322 4.77838 4.89082 5.00813 5.53012 5.62863 5.76974 5.86239 6.06897 6.16661 6.39373 6.63368 6.90690 7.40978 8.95498 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.057954 B = 0.003116 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.029514 B = 8984.843210 C = 9332.298038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.155 3.845 4 C 0.279 3.721 5 N -0.515 5.515 6 S 0.297 5.703 7 C 0.289 3.711 8 N -0.595 5.595 9 C 0.516 3.484 10 O -0.526 6.526 11 C -0.107 4.107 12 C 0.037 3.963 13 C -0.540 4.540 14 H 0.080 0.920 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.290 1.290 20 H -0.255 1.255 21 N -0.545 5.545 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.446 0.554 28 H 0.125 0.875 29 H 0.124 0.876 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 2.325 1.600 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C 0.074 3.926 4 C -0.012 4.012 5 N -0.350 5.350 6 S 0.434 5.566 7 C -0.088 4.088 8 N -0.248 5.248 9 C 0.306 3.694 10 O -0.398 6.398 11 C -0.146 4.146 12 C -0.001 4.001 13 C -0.578 4.578 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.178 1.178 21 N -0.278 5.278 22 H 0.077 0.923 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.289 0.711 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.276 2.088 -0.451 22.378 hybrid contribution 0.272 0.090 1.368 1.397 sum -22.003 2.177 0.917 22.130 Atomic orbital electron populations 1.23016 0.77759 1.04271 1.01765 1.87891 1.22730 1.26889 1.95818 1.20905 0.81164 0.86169 1.04386 1.23278 0.99803 0.96031 0.82075 1.77369 1.01885 1.28730 1.27062 1.86146 1.07940 1.65334 0.97208 1.25296 0.90481 0.95729 0.97318 1.43068 1.03782 1.69098 1.08830 1.22307 0.81420 0.73202 0.92503 1.90708 1.78156 1.47161 1.23748 1.21747 0.91617 1.06737 0.94513 1.18781 0.90339 0.95603 0.95385 1.21684 0.91838 1.50233 0.94033 0.90195 1.26050 1.01300 0.94876 0.98032 1.70157 1.15823 1.51309 1.20327 0.85395 0.77646 0.78488 0.79174 1.19985 1.21620 1.17839 1.67369 1.02700 1.26954 1.30788 0.92291 0.88486 0.92014 0.87984 0.88597 0.71088 0.85684 0.85816 0.99121 0.99013 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.97 10.69 -148.98 -1.59 -10.56 16 3 C 0.15 3.02 6.47 71.24 0.46 3.48 16 4 C 0.28 7.74 7.19 139.40 1.00 8.74 16 5 N -0.51 -15.97 12.15 -60.46 -0.73 -16.71 16 6 S 0.30 9.68 21.17 -56.49 -1.20 8.48 16 7 C 0.29 8.49 8.51 178.72 1.52 10.01 16 8 N -0.59 -15.02 5.40 -311.56 -1.68 -16.70 16 9 C 0.52 16.79 7.79 87.66 0.68 17.47 16 10 O -0.53 -21.73 13.74 -3.01 -0.04 -21.77 16 11 C -0.11 -3.49 5.64 29.85 0.17 -3.32 16 12 C 0.04 1.81 4.26 29.85 0.13 1.94 16 13 C -0.54 -28.19 9.11 25.60 0.23 -27.95 16 14 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 17 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 21 N -0.55 -15.38 10.60 -199.71 -2.12 -17.50 16 22 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.45 7.60 8.82 -92.71 -0.82 6.78 16 28 H 0.13 3.36 8.14 -2.38 -0.02 3.35 16 29 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 30 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 31 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 32 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -73.19 301.38 1.19 -72.00 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 0.34 Total: 2.75 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.91 Total: 12.14 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.25 Total: -107.31 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.63 Total: -32.33 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 9.68 SS G_CDS: -1.20 Total: 8.48 kcal Total: -73.19 1.19 -72.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291882423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.249 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds