Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47188 * 2 1 4 4 C 1.36936 * 120.00205 * 264.63049 * 3 2 1 5 5 H 1.07996 * 120.00667 * 187.75794 * 4 3 2 6 6 C 1.38812 * 119.99744 * 7.76897 * 4 3 2 7 7 N 1.31616 * 120.00359 * 23.34118 * 6 4 3 8 8 Si 1.86804 * 119.99943 * 203.34927 * 6 4 3 9 9 H 1.48503 * 109.47298 * 89.99410 * 8 6 4 10 10 H 1.48499 * 109.47008 * 209.99978 * 8 6 4 11 11 H 1.48500 * 109.47058 * 329.99502 * 8 6 4 12 12 C 1.46503 * 119.99948 * 84.63737 * 3 2 1 13 13 H 1.09003 * 109.46833 * 304.75522 * 12 3 2 14 14 C 1.52999 * 109.47019 * 184.75975 * 12 3 2 15 15 C 1.50702 * 109.47264 * 64.75445 * 12 3 2 16 16 C 1.38270 * 119.96696 * 46.17315 * 15 12 3 17 17 C 1.38192 * 120.04397 * 179.72471 * 16 15 12 18 18 C 1.38445 * 119.98917 * 0.56898 * 17 16 15 19 19 F 1.35104 * 120.02859 * 179.73255 * 18 17 16 20 20 C 1.38547 * 119.93692 * 359.69900 * 18 17 16 21 21 Cl 1.73600 * 120.02175 * 180.02562 * 20 18 17 22 22 C 1.38214 * 119.96692 * 226.44139 * 15 12 3 23 23 H 1.09001 * 109.47393 * 59.99445 * 1 2 3 24 24 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47312 * 300.00263 * 1 2 3 26 26 H 1.09002 * 109.47459 * 120.00003 * 2 1 3 27 27 H 1.09001 * 109.47531 * 240.00008 * 2 1 3 28 28 H 0.97001 * 120.00153 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47088 * 180.02562 * 14 12 3 30 30 H 1.09003 * 109.46948 * 299.99477 * 14 12 3 31 31 H 1.08994 * 109.47189 * 59.99553 * 14 12 3 32 32 H 1.07995 * 119.97352 * 359.97438 * 16 15 12 33 33 H 1.08007 * 120.00348 * 180.27368 * 17 16 15 34 34 H 1.07997 * 119.99658 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3511 1.9898 -1.1807 5 1 2.8276 2.9590 -1.1732 6 6 2.0760 1.3611 -2.3873 7 7 1.1270 0.4516 -2.4541 8 14 3.0529 1.8056 -3.9162 9 1 4.2456 0.9264 -4.0146 10 1 2.2012 1.6212 -5.1187 11 1 3.4883 3.2228 -3.8307 12 6 2.1507 2.1114 1.2632 13 1 1.1959 2.1034 1.7892 14 6 2.5627 3.5566 0.9761 15 6 3.2007 1.4499 2.1181 16 6 4.4129 1.0832 1.5631 17 6 5.3791 0.4817 2.3469 18 6 5.1290 0.2353 3.6861 19 9 6.0710 -0.3576 4.4518 20 6 3.9121 0.5979 4.2403 21 17 3.5964 0.2905 5.9195 22 6 2.9490 1.2053 3.4550 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.9350 0.0119 -3.2972 29 1 2.6616 4.0997 1.9160 30 1 3.5174 3.5646 0.4502 31 1 1.8032 4.0350 0.3578 32 1 4.6061 1.2708 0.5172 33 1 6.3274 0.1996 1.9136 34 1 2.0001 1.4879 3.8862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298120979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -10.186682 kcal Electronic energy + Delta-G solvation = -18935.705889 eV Core-core repulsion = 15809.520195 eV Total energy + Delta-G solvation = -3126.185694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.96288 -40.51766 -38.14641 -37.36047 -34.32378 -32.39861 -31.95776 -30.68838 -29.05860 -26.37442 -24.20396 -23.96775 -22.93833 -21.24193 -18.81474 -18.09400 -17.73789 -17.23237 -16.75722 -16.53595 -15.66289 -15.54094 -15.31215 -14.82808 -14.43402 -14.12421 -13.99449 -13.79343 -13.55396 -13.20409 -12.87569 -12.61881 -12.60035 -12.40333 -12.18145 -12.15956 -12.07909 -11.81606 -11.77043 -11.47534 -11.15245 -10.29968 -9.94234 -9.50716 -8.78847 -7.70958 -5.02380 0.01988 0.14183 0.97638 1.52861 1.57427 1.62053 2.46691 2.63967 3.09456 3.36885 3.63267 3.73915 3.87953 4.22091 4.31391 4.45080 4.63883 4.71039 4.75380 4.87985 4.93692 4.99741 5.09047 5.16444 5.20920 5.27563 5.35288 5.47790 5.69569 5.77685 5.78316 5.88375 6.19801 6.43914 7.29778 8.01019 8.41743 9.31316 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.005497 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.566216 B = 5092.605775 C = 5441.419271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.173 3.827 3 N -0.598 5.598 4 C -0.244 4.244 5 H 0.091 0.909 6 C -0.053 4.053 7 N -0.921 5.921 8 Si 0.946 3.054 9 H -0.294 1.294 10 H -0.307 1.307 11 H -0.272 1.272 12 C 0.204 3.796 13 H 0.045 0.955 14 C -0.130 4.130 15 C -0.082 4.082 16 C -0.063 4.063 17 C -0.141 4.141 18 C 0.085 3.915 19 F -0.137 7.137 20 C -0.078 4.078 21 Cl -0.055 7.055 22 C -0.082 4.082 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.242 0.758 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 1.736 12.197 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.320 5.320 4 C -0.373 4.373 5 H 0.109 0.891 6 C -0.247 4.247 7 N -0.569 5.569 8 Si 0.777 3.223 9 H -0.222 1.222 10 H -0.235 1.235 11 H -0.197 1.197 12 C 0.097 3.903 13 H 0.063 0.937 14 C -0.187 4.187 15 C -0.085 4.085 16 C -0.082 4.082 17 C -0.159 4.159 18 C 0.065 3.935 19 F -0.115 7.115 20 C -0.106 4.106 21 Cl -0.026 7.026 22 C -0.101 4.101 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.488 1.634 12.235 13.508 hybrid contribution 0.309 -0.286 -0.839 0.939 sum 5.796 1.347 11.396 12.856 Atomic orbital electron populations 1.22079 0.99082 0.98503 0.99734 1.20619 0.92510 0.84784 0.97300 1.44379 1.75651 1.10676 1.01315 1.19695 1.30784 1.03023 0.83825 0.89115 1.25290 0.99290 1.00663 0.99490 1.70319 1.30167 1.31855 1.24541 0.85564 0.78532 0.77842 0.80361 1.22204 1.23489 1.19686 1.19380 0.93365 0.91612 0.85929 0.93733 1.21809 1.01557 0.93987 1.01373 1.20953 0.96380 0.97865 0.93327 1.21079 0.91959 0.94854 1.00304 1.21293 1.02110 1.01597 0.90946 1.17489 0.86168 0.99981 0.89851 1.91491 1.63320 1.81489 1.75217 1.20978 0.95492 1.06809 0.87290 1.98358 1.95591 1.94640 1.14033 1.20972 0.98920 0.97557 0.92621 0.92377 0.95202 0.96003 0.96956 0.92029 0.94873 0.90926 0.92498 0.92904 0.84869 0.82360 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 9.73 71.98 0.70 -5.29 16 2 C 0.17 7.89 5.51 86.38 0.48 8.37 16 3 N -0.60 -26.19 2.12 -682.20 -1.45 -27.63 16 4 C -0.24 -11.72 8.95 84.03 0.75 -10.97 16 5 H 0.09 4.16 5.69 -2.91 -0.02 4.14 16 6 C -0.05 -2.72 4.96 84.86 0.42 -2.30 16 7 N -0.92 -49.96 8.47 21.65 0.18 -49.77 16 8 Si 0.95 42.39 29.61 68.60 2.03 44.42 16 9 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C 0.20 7.18 3.23 44.24 0.14 7.32 16 13 H 0.04 1.57 7.94 -2.39 -0.02 1.55 16 14 C -0.13 -4.09 7.79 71.98 0.56 -3.53 16 15 C -0.08 -2.57 4.12 -19.86 -0.08 -2.66 16 16 C -0.06 -1.97 9.21 22.27 0.21 -1.77 16 17 C -0.14 -3.84 10.03 22.31 0.22 -3.62 16 18 C 0.09 2.39 7.28 22.39 0.16 2.55 16 19 F -0.14 -3.83 16.84 44.97 0.76 -3.07 16 20 C -0.08 -2.15 6.33 22.36 0.14 -2.01 16 21 Cl -0.06 -1.37 28.62 -2.72 -0.08 -1.45 16 22 C -0.08 -2.26 9.45 22.28 0.21 -2.04 16 23 H 0.06 2.97 6.37 -2.39 -0.02 2.96 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.01 0.52 7.48 -2.39 -0.02 0.51 16 27 H 0.06 3.21 5.78 -2.39 -0.01 3.20 16 28 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.83 7.03 -2.39 -0.02 1.82 16 31 H 0.05 1.79 7.77 -2.39 -0.02 1.77 16 32 H 0.13 4.54 7.91 -2.91 -0.02 4.51 16 33 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.15 3.67 7.99 -2.91 -0.02 3.64 16 Total: -1.00 -53.13 298.31 6.47 -46.67 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.10 Total: 6.77 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 3.91 Total: -15.93 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.26 Total: -77.41 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.76 Total: -3.07 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -53.13 6.47 -46.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298120979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.481 kcal (2) G-P(sol) polarization free energy of solvation -53.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds