Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47488 * 2 1 4 4 C 1.36938 * 119.99762 * 84.31213 * 3 2 1 5 5 H 1.07998 * 119.99607 * 160.53267 * 4 3 2 6 6 C 1.38811 * 119.99910 * 340.52662 * 4 3 2 7 7 N 1.31615 * 120.00248 * 29.22841 * 6 4 3 8 8 Si 1.86801 * 119.99654 * 209.21646 * 6 4 3 9 9 H 1.48502 * 109.47466 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46693 * 120.00575 * 8 6 4 11 11 H 1.48501 * 109.47485 * 240.00254 * 8 6 4 12 12 C 1.46501 * 119.99844 * 264.31673 * 3 2 1 13 13 H 1.08998 * 109.47189 * 55.51727 * 12 3 2 14 14 C 1.53002 * 109.46796 * 175.51648 * 12 3 2 15 15 C 1.50696 * 109.46745 * 295.51600 * 12 3 2 16 16 C 1.38273 * 119.96709 * 134.70808 * 15 12 3 17 17 C 1.38192 * 120.04725 * 179.97438 * 16 15 12 18 18 C 1.38441 * 119.99218 * 359.97438 * 17 16 15 19 19 F 1.35097 * 120.03354 * 180.02562 * 18 17 16 20 20 C 1.38551 * 119.93631 * 0.02562 * 18 17 16 21 21 Cl 1.73599 * 120.02463 * 179.97438 * 20 18 17 22 22 C 1.38208 * 119.97166 * 314.43027 * 15 12 3 23 23 H 1.09005 * 109.47125 * 300.00220 * 1 2 3 24 24 H 1.08998 * 109.47449 * 59.99555 * 1 2 3 25 25 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46677 * 239.99909 * 2 1 3 27 27 H 1.09001 * 109.46879 * 119.99977 * 2 1 3 28 28 H 0.96998 * 120.00164 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47187 * 60.00078 * 14 12 3 30 30 H 1.09002 * 109.46900 * 179.97438 * 14 12 3 31 31 H 1.08994 * 109.47195 * 300.00172 * 14 12 3 32 32 H 1.08007 * 119.97196 * 359.97438 * 16 15 12 33 33 H 1.08005 * 120.00092 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99536 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1359 2.0659 1.1801 5 1 2.7704 2.9379 1.2376 6 6 1.4392 1.6391 2.3024 7 7 1.1522 0.3635 2.4532 8 14 0.9093 2.8754 3.5987 9 1 1.3504 4.2350 3.1958 10 1 -0.5699 2.8534 3.7282 11 1 1.5256 2.5207 4.9023 12 6 2.3811 2.0299 -1.2625 13 1 1.5355 1.9871 -1.9490 14 6 2.7496 3.4910 -0.9976 15 6 3.5602 1.3170 -1.8729 16 6 3.5588 1.0087 -3.2208 17 6 4.6394 0.3555 -3.7823 18 6 5.7246 0.0099 -2.9951 19 9 6.7817 -0.6282 -3.5433 20 6 5.7254 0.3192 -1.6446 21 17 7.0847 -0.1136 -0.6552 22 6 4.6444 0.9772 -1.0861 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.6658 0.0653 3.2376 29 1 3.5952 3.5338 -0.3112 30 1 3.0199 3.9736 -1.9369 31 1 1.8968 4.0065 -0.5561 32 1 2.7124 1.2785 -3.8351 33 1 4.6373 0.1146 -4.8351 34 1 4.6462 1.2222 -0.0342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298120982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = 1.224848 kcal Electronic energy + Delta-G solvation = -19003.354804 eV Core-core repulsion = 15877.663951 eV Total energy + Delta-G solvation = -3125.690853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.74663 -39.19727 -36.61276 -35.98762 -32.77361 -30.66378 -30.52403 -29.28286 -27.45359 -24.72021 -23.00552 -22.44350 -21.16323 -19.68327 -17.56946 -16.47073 -16.39772 -15.69764 -15.53793 -15.10830 -14.11729 -13.87930 -13.64524 -13.43872 -13.02460 -12.83655 -12.56496 -12.19669 -11.95783 -11.64880 -11.23863 -11.20170 -11.02600 -10.89010 -10.78589 -10.57529 -10.53956 -10.37525 -9.94982 -9.80108 -9.42434 -8.68471 -8.34379 -8.15069 -6.88536 -5.80658 -3.15189 1.24319 1.39963 2.27115 3.36531 3.47631 3.48076 3.74133 4.32444 4.47433 4.85203 5.09240 5.25457 5.29103 5.44842 5.55573 5.86269 6.01187 6.07273 6.13107 6.25538 6.35878 6.38356 6.56706 6.64877 6.81551 6.84075 6.96688 7.03269 7.04269 7.15829 7.73590 7.84240 7.91991 8.43214 9.20165 9.84169 10.30744 11.16258 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.006089 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.808502 B = 4597.596387 C = 4992.243982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.155 3.845 3 N -0.590 5.590 4 C -0.267 4.267 5 H 0.082 0.918 6 C 0.016 3.984 7 N -0.880 5.880 8 Si 0.877 3.123 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.294 1.294 12 C 0.209 3.791 13 H 0.046 0.954 14 C -0.135 4.135 15 C -0.079 4.079 16 C -0.092 4.092 17 C -0.149 4.149 18 C 0.087 3.913 19 F -0.137 7.137 20 C -0.075 4.075 21 Cl -0.063 7.063 22 C -0.051 4.051 23 H 0.071 0.929 24 H 0.011 0.989 25 H 0.022 0.978 26 H 0.000 1.000 27 H 0.107 0.893 28 H 0.252 0.748 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 0.874 -10.156 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 N -0.312 5.312 4 C -0.394 4.394 5 H 0.100 0.900 6 C -0.183 4.183 7 N -0.524 5.524 8 Si 0.707 3.293 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.221 1.221 12 C 0.101 3.899 13 H 0.063 0.937 14 C -0.192 4.192 15 C -0.082 4.082 16 C -0.111 4.111 17 C -0.168 4.168 18 C 0.067 3.933 19 F -0.116 7.116 20 C -0.102 4.102 21 Cl -0.034 7.034 22 C -0.070 4.070 23 H 0.089 0.911 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.018 0.982 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.576 0.722 -9.925 11.407 hybrid contribution -0.105 0.290 0.683 0.749 sum 5.470 1.012 -9.242 10.787 Atomic orbital electron populations 1.22285 0.99912 0.98015 1.00102 1.21073 0.92126 0.84499 0.99203 1.44222 1.75375 1.11106 1.00533 1.19210 1.23194 1.09060 0.87982 0.90027 1.24855 0.99680 0.95647 0.98096 1.70150 1.41988 1.12276 1.27972 0.86607 0.78847 0.82449 0.81441 1.20372 1.21598 1.22150 1.19287 0.90464 0.91237 0.88929 0.93680 1.21859 1.02435 0.94909 1.00007 1.21313 0.96862 0.97286 0.92737 1.21041 0.97588 0.97438 0.94988 1.20979 0.93213 1.02442 1.00144 1.17361 0.86311 0.99402 0.90218 1.91482 1.54823 1.79560 1.85736 1.21062 0.92882 1.05985 0.90288 1.98359 1.43522 1.91940 1.69614 1.21029 0.89781 0.94376 1.01766 0.91060 0.96989 0.95919 0.98156 0.87549 0.93682 0.92177 0.93954 0.91451 0.84950 0.84616 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.62 37.16 0.36 -2.87 16 2 C 0.16 3.59 5.56 -4.04 -0.02 3.56 16 3 N -0.59 -13.22 2.11 -166.98 -0.35 -13.58 16 4 C -0.27 -6.55 8.69 -15.06 -0.13 -6.68 16 5 H 0.08 1.96 5.97 -52.49 -0.31 1.65 16 6 C 0.02 0.41 4.66 -17.43 -0.08 0.33 16 7 N -0.88 -23.38 8.49 55.49 0.47 -22.91 16 8 Si 0.88 20.47 29.64 -169.99 -5.04 15.43 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.21 3.84 3.22 -69.08 -0.22 3.62 16 13 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 14 C -0.13 -2.27 7.88 37.16 0.29 -1.97 16 15 C -0.08 -1.32 4.13 -104.62 -0.43 -1.75 16 16 C -0.09 -1.29 9.66 -39.59 -0.38 -1.67 16 17 C -0.15 -2.01 10.03 -39.52 -0.40 -2.41 16 18 C 0.09 1.35 7.28 -39.39 -0.29 1.06 16 19 F -0.14 -2.11 16.84 2.25 0.04 -2.08 16 20 C -0.07 -1.24 6.33 -39.43 -0.25 -1.49 16 21 Cl -0.06 -1.01 28.62 -51.86 -1.48 -2.49 16 22 C -0.05 -0.90 9.01 -39.56 -0.36 -1.25 16 23 H 0.07 1.79 6.02 -51.93 -0.31 1.47 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.00 0.00 7.48 -51.93 -0.39 -0.39 16 27 H 0.11 2.79 5.85 -51.93 -0.30 2.49 16 28 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.06 1.06 6.92 -51.93 -0.36 0.70 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 32 H 0.13 1.54 8.00 -52.48 -0.42 1.12 16 33 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.15 2.96 7.89 -52.49 -0.41 2.55 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -25.74 297.81 -7.95 -33.69 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.16 Total: -1.04 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.91 Total: -11.52 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.12 Total: -36.49 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.04 Total: 15.43 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.74 -7.95 -33.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298120982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.916 kcal (2) G-P(sol) polarization free energy of solvation -25.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds