Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47488 * 2 1 4 4 C 1.36938 * 119.99762 * 84.31213 * 3 2 1 5 5 H 1.07998 * 119.99607 * 160.53267 * 4 3 2 6 6 C 1.38811 * 119.99910 * 340.52662 * 4 3 2 7 7 N 1.31615 * 120.00248 * 29.22841 * 6 4 3 8 8 Si 1.86801 * 119.99654 * 209.21646 * 6 4 3 9 9 H 1.48502 * 109.47466 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46693 * 120.00575 * 8 6 4 11 11 H 1.48501 * 109.47485 * 240.00254 * 8 6 4 12 12 C 1.46501 * 119.99844 * 264.31673 * 3 2 1 13 13 H 1.08998 * 109.47189 * 55.51727 * 12 3 2 14 14 C 1.53002 * 109.46796 * 175.51648 * 12 3 2 15 15 C 1.50696 * 109.46745 * 295.51600 * 12 3 2 16 16 C 1.38273 * 119.96709 * 134.70808 * 15 12 3 17 17 C 1.38192 * 120.04725 * 179.97438 * 16 15 12 18 18 C 1.38441 * 119.99218 * 359.97438 * 17 16 15 19 19 F 1.35097 * 120.03354 * 180.02562 * 18 17 16 20 20 C 1.38551 * 119.93631 * 0.02562 * 18 17 16 21 21 Cl 1.73599 * 120.02463 * 179.97438 * 20 18 17 22 22 C 1.38208 * 119.97166 * 314.43027 * 15 12 3 23 23 H 1.09005 * 109.47125 * 300.00220 * 1 2 3 24 24 H 1.08998 * 109.47449 * 59.99555 * 1 2 3 25 25 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46677 * 239.99909 * 2 1 3 27 27 H 1.09001 * 109.46879 * 119.99977 * 2 1 3 28 28 H 0.96998 * 120.00164 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47187 * 60.00078 * 14 12 3 30 30 H 1.09002 * 109.46900 * 179.97438 * 14 12 3 31 31 H 1.08994 * 109.47195 * 300.00172 * 14 12 3 32 32 H 1.08007 * 119.97196 * 359.97438 * 16 15 12 33 33 H 1.08005 * 120.00092 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.99536 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1359 2.0659 1.1801 5 1 2.7704 2.9379 1.2376 6 6 1.4392 1.6391 2.3024 7 7 1.1522 0.3635 2.4532 8 14 0.9093 2.8754 3.5987 9 1 1.3504 4.2350 3.1958 10 1 -0.5699 2.8534 3.7282 11 1 1.5256 2.5207 4.9023 12 6 2.3811 2.0299 -1.2625 13 1 1.5355 1.9871 -1.9490 14 6 2.7496 3.4910 -0.9976 15 6 3.5602 1.3170 -1.8729 16 6 3.5588 1.0087 -3.2208 17 6 4.6394 0.3555 -3.7823 18 6 5.7246 0.0099 -2.9951 19 9 6.7817 -0.6282 -3.5433 20 6 5.7254 0.3192 -1.6446 21 17 7.0847 -0.1136 -0.6552 22 6 4.6444 0.9772 -1.0861 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.6658 0.0653 3.2376 29 1 3.5952 3.5338 -0.3112 30 1 3.0199 3.9736 -1.9369 31 1 1.8968 4.0065 -0.5561 32 1 2.7124 1.2785 -3.8351 33 1 4.6373 0.1146 -4.8351 34 1 4.6462 1.2222 -0.0342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298120982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -9.385536 kcal Electronic energy + Delta-G solvation = -19003.814905 eV Core-core repulsion = 15877.663951 eV Total energy + Delta-G solvation = -3126.150954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.94506 -40.48573 -38.09469 -37.38141 -34.39037 -32.33653 -31.86702 -30.74354 -29.02977 -26.43894 -24.33591 -23.77638 -22.81306 -21.25018 -18.81858 -18.19835 -17.71409 -17.20988 -16.74417 -16.62888 -15.59256 -15.42037 -15.30084 -14.69372 -14.33493 -14.18286 -13.97742 -13.82188 -13.52078 -13.43207 -12.80736 -12.65099 -12.55992 -12.44552 -12.22672 -12.19221 -12.08691 -11.76308 -11.73491 -11.56049 -11.27281 -10.15943 -9.89533 -9.50517 -8.70203 -7.73442 -5.06729 0.02071 0.19876 1.02483 1.47796 1.55407 1.60753 2.48252 2.62711 3.12309 3.30690 3.64869 3.79116 3.87762 4.24815 4.32309 4.55489 4.67173 4.71934 4.75603 4.90073 4.98598 5.05605 5.10186 5.13946 5.21143 5.26556 5.35744 5.49743 5.68822 5.81612 5.83750 5.95902 6.04991 6.53285 7.29249 8.02330 8.44205 9.22157 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.006089 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.808502 B = 4597.596387 C = 4992.243982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.163 3.837 3 N -0.601 5.601 4 C -0.255 4.255 5 H 0.084 0.916 6 C -0.033 4.033 7 N -0.904 5.904 8 Si 0.927 3.073 9 H -0.270 1.270 10 H -0.298 1.298 11 H -0.304 1.304 12 C 0.205 3.795 13 H 0.061 0.939 14 C -0.129 4.129 15 C -0.089 4.089 16 C -0.078 4.078 17 C -0.132 4.132 18 C 0.082 3.918 19 F -0.137 7.137 20 C -0.087 4.087 21 Cl -0.067 7.067 22 C -0.066 4.066 23 H 0.041 0.959 24 H 0.026 0.974 25 H 0.031 0.969 26 H 0.013 0.987 27 H 0.071 0.929 28 H 0.244 0.756 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 1.455 -12.917 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 N -0.324 5.324 4 C -0.384 4.384 5 H 0.102 0.898 6 C -0.229 4.229 7 N -0.550 5.550 8 Si 0.757 3.243 9 H -0.195 1.195 10 H -0.225 1.225 11 H -0.233 1.233 12 C 0.098 3.902 13 H 0.078 0.922 14 C -0.186 4.186 15 C -0.092 4.092 16 C -0.097 4.097 17 C -0.151 4.151 18 C 0.062 3.938 19 F -0.116 7.116 20 C -0.114 4.114 21 Cl -0.038 7.038 22 C -0.085 4.085 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.546 1.330 -12.712 13.932 hybrid contribution -0.003 0.106 1.437 1.441 sum 5.542 1.436 -11.274 12.645 Atomic orbital electron populations 1.22115 0.99381 0.98384 0.99236 1.20816 0.92459 0.84935 0.98021 1.44359 1.75528 1.10996 1.01487 1.19436 1.21820 1.08436 0.88756 0.89824 1.25342 1.00992 0.96585 0.99984 1.70308 1.43368 1.13140 1.28208 0.85815 0.77686 0.81337 0.79419 1.19463 1.22530 1.23272 1.19499 0.91462 0.91859 0.87330 0.92160 1.21801 1.01265 0.94240 1.01314 1.21109 0.95897 0.98150 0.94068 1.21348 0.98606 0.95937 0.93798 1.21370 0.91634 1.00432 1.01625 1.17574 0.86983 0.99399 0.89867 1.91485 1.54996 1.79556 1.85560 1.21126 0.92715 1.06544 0.91059 1.98352 1.43563 1.91967 1.69934 1.20763 0.91083 0.96055 1.00584 0.94010 0.95481 0.94975 0.96851 0.91115 0.94598 0.93701 0.90615 0.92600 0.81525 0.80856 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.62 71.98 0.69 -5.13 16 2 C 0.16 7.47 5.56 86.38 0.48 7.95 16 3 N -0.60 -26.65 2.11 -682.20 -1.44 -28.09 16 4 C -0.26 -12.63 8.69 84.03 0.73 -11.90 16 5 H 0.08 4.04 5.97 -2.91 -0.02 4.02 16 6 C -0.03 -1.72 4.66 84.86 0.40 -1.33 16 7 N -0.90 -49.46 8.49 21.65 0.18 -49.27 16 8 Si 0.93 42.98 29.64 68.60 2.03 45.01 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 C 0.21 7.11 3.22 44.24 0.14 7.25 16 13 H 0.06 1.95 7.95 -2.39 -0.02 1.93 16 14 C -0.13 -4.09 7.88 71.98 0.57 -3.52 16 15 C -0.09 -2.78 4.13 -19.86 -0.08 -2.87 16 16 C -0.08 -1.86 9.66 22.27 0.22 -1.64 16 17 C -0.13 -2.97 10.03 22.31 0.22 -2.74 16 18 C 0.08 2.31 7.28 22.39 0.16 2.48 16 19 F -0.14 -3.89 16.84 44.97 0.76 -3.13 16 20 C -0.09 -2.80 6.33 22.37 0.14 -2.66 16 21 Cl -0.07 -2.13 28.62 -2.72 -0.08 -2.20 16 22 C -0.07 -2.29 9.01 22.28 0.20 -2.09 16 23 H 0.04 2.09 6.02 -2.38 -0.01 2.08 16 24 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.01 0.57 7.48 -2.39 -0.02 0.55 16 27 H 0.07 3.80 5.85 -2.39 -0.01 3.79 16 28 H 0.24 13.23 8.31 -92.71 -0.77 12.46 16 29 H 0.04 1.54 6.92 -2.39 -0.02 1.52 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.88 7.87 -2.39 -0.02 1.86 16 32 H 0.17 2.85 8.00 -2.91 -0.02 2.82 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.12 4.89 7.89 -2.91 -0.02 4.87 16 Total: -1.00 -56.05 297.81 6.43 -49.62 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.10 Total: 4.27 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.87 Total: -16.20 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.26 Total: -77.36 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.76 Total: -3.13 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.20 kcal Total: -56.05 6.43 -49.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298120982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.237 kcal (2) G-P(sol) polarization free energy of solvation -56.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds