Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47126 * 2 1 4 4 N 1.46906 * 109.47009 * 119.99873 * 2 1 3 5 5 C 1.46901 * 110.99793 * 300.00244 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 C 1.50700 * 109.47115 * 239.99875 * 2 1 3 15 15 C 1.38245 * 120.00458 * 239.72175 * 14 2 1 16 16 C 1.38218 * 120.04791 * 179.76719 * 15 14 2 17 17 C 1.38257 * 120.06120 * 0.51724 * 16 15 14 18 18 C 1.38283 * 120.01269 * 359.74069 * 17 16 15 19 19 Cl 1.73598 * 120.02443 * 179.97438 * 18 17 16 20 20 C 1.38394 * 120.00788 * 60.00239 * 14 2 1 21 21 F 1.35099 * 120.03333 * 359.95243 * 20 14 2 22 22 H 1.08994 * 109.47232 * 300.00100 * 1 2 3 23 23 H 1.09001 * 109.46911 * 60.00072 * 1 2 3 24 24 H 1.09002 * 109.47026 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47374 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47167 * 299.99771 * 3 2 1 27 27 H 1.09006 * 109.47425 * 59.99969 * 3 2 1 28 28 H 1.00899 * 110.99995 * 176.04642 * 4 2 1 29 29 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 31 31 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 32 32 H 1.08004 * 119.97377 * 0.02562 * 15 14 2 33 33 H 1.07994 * 119.97029 * 180.25279 * 16 15 14 34 34 H 1.08001 * 119.99928 * 179.76534 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5486 -0.0263 2.4211 6 6 2.0691 -0.7636 3.6279 7 1 2.6884 -1.6392 3.5002 8 6 1.7557 -0.3198 4.8951 9 7 2.2104 -0.9629 5.9483 10 14 0.6853 1.1951 5.1160 11 1 -0.7418 0.7885 5.1748 12 1 1.0561 1.8834 6.3784 13 1 0.8904 2.1175 3.9704 14 6 2.0323 -0.7104 -1.2304 15 6 2.8319 -1.8311 -1.1037 16 6 3.2891 -2.4862 -2.2316 17 6 2.9566 -2.0157 -3.4884 18 6 2.1614 -0.8918 -3.6181 19 17 1.7442 -0.3004 -5.1961 20 6 1.6982 -0.2378 -2.4875 21 9 0.9207 0.8601 -2.6124 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.0262 -0.7626 1.1910 29 1 0.4587 -0.0265 2.4379 30 1 1.9121 1.0011 2.4378 31 1 1.9896 -0.6509 6.8398 32 1 3.0960 -2.1974 -0.1226 33 1 3.9103 -3.3639 -2.1311 34 1 3.3176 -2.5261 -4.3690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299184532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -22.937699 kcal Electronic energy + Delta-G solvation = -18767.026178 eV Core-core repulsion = 15640.287559 eV Total energy + Delta-G solvation = -3126.738619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.00180 -39.61456 -37.38208 -36.38177 -33.01915 -31.26810 -30.53705 -29.43557 -27.10246 -26.72631 -23.51695 -22.71089 -21.39730 -19.22775 -17.82857 -17.08008 -16.56620 -16.01914 -15.79705 -15.04644 -14.46555 -14.14284 -13.97126 -13.86399 -13.49006 -13.17906 -12.83886 -12.69473 -12.55971 -12.11717 -11.76362 -11.52115 -11.43809 -11.28066 -11.19866 -10.96034 -10.79737 -10.51812 -10.31443 -9.88675 -9.31095 -8.84729 -8.73387 -8.62221 -7.59986 -6.09959 -4.07798 0.95047 1.03122 1.88371 3.25809 3.33533 3.34755 3.41529 4.02897 4.38161 4.49956 4.73412 4.89358 4.99512 5.18951 5.22929 5.26614 5.42844 5.56752 5.77932 5.80793 5.90533 6.01855 6.10141 6.16866 6.32273 6.34803 6.41853 6.55073 6.69135 6.77742 6.99833 7.54443 7.80261 8.18927 8.58367 8.97217 9.51861 11.03250 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.004691 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.225737 B = 5968.077760 C = 6535.225085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.147 3.853 3 C -0.184 4.184 4 N -0.666 5.666 5 C 0.161 3.839 6 C -0.516 4.516 7 H 0.079 0.921 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.875 3.125 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C -0.082 4.082 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.095 4.095 18 C -0.077 4.077 19 Cl -0.061 7.061 20 C 0.110 3.890 21 F -0.125 7.125 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.336 0.664 29 H 0.028 0.972 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 0.479 -19.599 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.055 3.945 3 C -0.243 4.243 4 N -0.297 5.297 5 C 0.033 3.967 6 C -0.555 4.555 7 H 0.097 0.903 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.702 3.298 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.084 4.084 15 C -0.087 4.087 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.105 4.105 19 Cl -0.033 7.033 20 C 0.090 3.910 21 F -0.103 7.103 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.046 0.954 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.059 0.115 -19.524 19.525 hybrid contribution -0.191 1.822 0.088 1.834 sum -0.132 1.937 -19.436 19.533 Atomic orbital electron populations 1.21927 0.93034 1.02742 1.02088 1.19706 0.95742 0.90693 0.88354 1.22626 1.01239 0.97456 1.02971 1.60780 1.15649 1.52591 1.00690 1.20108 0.96154 0.92828 0.87574 1.21029 1.32404 1.13499 0.88526 0.90311 1.24878 0.95731 0.96695 0.95880 1.69892 1.45577 1.40201 0.98153 0.86869 0.81321 0.83823 0.77801 1.20099 1.21202 1.19212 1.20037 0.98624 0.97176 0.92515 1.21327 0.94045 0.92896 1.00464 1.21237 1.00564 1.00582 0.91321 1.20924 0.97140 0.94326 0.98951 1.20904 1.04779 0.99274 0.85518 1.98367 1.92611 1.88058 1.24221 1.17203 0.95216 0.86228 0.92383 1.91471 1.71964 1.50400 1.96485 0.91498 0.92347 0.91757 0.92682 0.92061 0.91152 0.84535 0.95438 0.99097 0.92619 0.82711 0.84416 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.03 37.16 0.30 -2.00 16 2 C 0.15 2.42 0.69 -132.75 -0.09 2.33 16 3 C -0.18 -2.93 8.02 37.15 0.30 -2.63 16 4 N -0.67 -12.76 5.10 -102.39 -0.52 -13.28 16 5 C 0.16 3.69 3.72 -4.97 -0.02 3.68 16 6 C -0.52 -14.22 9.87 -34.44 -0.34 -14.56 16 7 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 10 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C -0.08 -1.19 4.78 -104.56 -0.50 -1.69 16 15 C -0.07 -0.90 9.14 -39.59 -0.36 -1.26 16 16 C -0.12 -1.24 10.04 -39.58 -0.40 -1.64 16 17 C -0.09 -0.98 9.83 -39.56 -0.39 -1.37 16 18 C -0.08 -0.95 6.33 -39.43 -0.25 -1.20 16 19 Cl -0.06 -0.70 28.62 -51.86 -1.48 -2.19 16 20 C 0.11 1.54 6.77 -39.39 -0.27 1.27 16 21 F -0.12 -1.82 12.95 2.25 0.03 -1.79 16 22 H 0.07 1.15 6.40 -51.93 -0.33 0.82 16 23 H 0.06 0.87 6.31 -51.93 -0.33 0.54 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.90 6.31 -51.93 -0.33 0.58 16 27 H 0.07 1.21 6.40 -51.93 -0.33 0.88 16 28 H 0.34 6.17 7.53 -39.29 -0.30 5.87 16 29 H 0.03 0.65 5.73 -51.93 -0.30 0.35 16 30 H -0.01 -0.20 5.36 -51.93 -0.28 -0.48 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.16 2.07 6.40 -52.48 -0.34 1.73 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -29.30 290.73 -7.41 -36.72 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.81 Total: 3.19 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.12 Total: -17.18 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.25 Total: -39.63 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.30 -7.41 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299184532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.782 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds