Wall clock time and date at job start Mon Mar 30 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86797 * 120.00346 * 2 1 4 4 H 1.48509 * 109.46990 * 275.55420 * 3 2 1 5 5 H 1.48501 * 109.47282 * 35.55225 * 3 2 1 6 6 H 1.48500 * 109.47337 * 155.55704 * 3 2 1 7 7 C 1.39077 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00146 * 339.89280 * 7 2 1 9 9 N 1.36787 * 119.99760 * 159.89946 * 7 2 1 10 10 C 1.34782 * 119.99752 * 318.39851 * 9 7 2 11 11 O 1.21705 * 120.00174 * 3.43639 * 10 9 7 12 12 C 1.46805 * 119.99989 * 183.43765 * 10 9 7 13 13 C 1.35956 * 125.14580 * 173.84822 * 12 10 9 14 14 C 1.46212 * 106.07325 * 180.02562 * 13 12 10 15 15 C 1.39727 * 134.18060 * 180.02562 * 14 13 12 16 16 C 1.36621 * 119.70885 * 179.97438 * 15 14 13 17 17 C 1.38835 * 120.44303 * 0.02562 * 16 15 14 18 18 C 1.37819 * 120.74451 * 359.97438 * 17 16 15 19 19 C 1.39004 * 119.86379 * 359.97438 * 18 17 16 20 20 O 1.34731 * 133.22519 * 180.02562 * 19 18 17 21 21 C 1.46495 * 120.00150 * 138.40762 * 9 7 2 22 22 C 1.52995 * 117.50094 * 1.86634 * 21 9 7 23 23 C 1.52995 * 60.00244 * 252.51755 * 22 21 9 24 24 H 0.97004 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.07995 * 126.96448 * 0.02953 * 13 12 10 26 26 H 1.08000 * 120.14615 * 359.97438 * 15 14 13 27 27 H 1.08002 * 119.77804 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.63047 * 180.26348 * 17 16 15 29 29 H 1.08004 * 120.06960 * 180.02562 * 18 17 16 30 30 H 1.08997 * 115.55494 * 147.58580 * 21 9 7 31 31 H 1.09003 * 117.49703 * 0.02562 * 22 21 9 32 32 H 1.08997 * 117.49931 * 145.02152 * 22 21 9 33 33 H 1.09006 * 117.49476 * 252.50607 * 23 22 21 34 34 H 1.08999 * 117.52033 * 107.48193 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3778 2.1141 -1.3936 5 1 1.5088 2.6160 0.8141 6 1 3.5990 1.4090 0.5793 7 6 2.0089 -1.2045 0.0005 8 1 1.5182 -2.1111 0.3225 9 7 3.3142 -1.2408 -0.4066 10 6 3.7036 -0.5326 -1.4852 11 8 2.9086 0.1879 -2.0596 12 6 5.0868 -0.6305 -1.9673 13 6 5.5607 -0.0602 -3.1069 14 6 6.9758 -0.4203 -3.1816 15 6 8.0024 -0.1512 -4.0905 16 6 9.2542 -0.6500 -3.8652 17 6 9.5119 -1.4219 -2.7403 18 6 8.5131 -1.6987 -1.8319 19 6 7.2317 -1.2014 -2.0391 20 8 6.0805 -1.3000 -1.3461 21 6 4.2889 -2.0495 0.3297 22 6 3.7763 -2.8648 1.5185 23 6 4.6302 -1.6180 1.7574 24 1 -0.4850 0.8401 -0.0004 25 1 5.0045 0.5377 -3.8137 26 1 7.8072 0.4483 -4.9673 27 1 10.0486 -0.4423 -4.5668 28 1 10.5073 -1.8059 -2.5729 29 1 8.7258 -2.3000 -0.9603 30 1 5.0895 -2.4823 -0.2701 31 1 2.7137 -2.7998 1.7525 32 1 4.2394 -3.8345 1.7008 33 1 5.6551 -1.7674 2.0970 34 1 4.1297 -0.7322 2.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299186296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:35 Heat of formation + Delta-G solvation = 47.768746 kcal Electronic energy + Delta-G solvation = -20579.569289 eV Core-core repulsion = 17445.956792 eV Total energy + Delta-G solvation = -3133.612498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19475 -39.09789 -37.66180 -36.55130 -33.19046 -32.46123 -31.69339 -30.32456 -29.32950 -25.82003 -23.33886 -22.60330 -21.95668 -21.53603 -20.97962 -19.69036 -18.11455 -17.30562 -16.55416 -16.00294 -15.95983 -15.17711 -14.96662 -14.27376 -13.98501 -13.89855 -13.38458 -13.31472 -13.00311 -12.80153 -12.56749 -12.18710 -11.87938 -11.71254 -11.24107 -10.92272 -10.76406 -10.43525 -10.25490 -10.10222 -9.90920 -9.68894 -8.95355 -8.73540 -8.53220 -8.01272 -7.67138 -6.39797 -4.12762 0.83766 1.42470 2.19466 2.83271 3.36357 3.43547 3.59545 3.75968 3.93526 4.09597 4.40468 4.59286 4.68814 4.78925 4.92372 5.04707 5.20591 5.30120 5.40601 5.45388 5.56054 5.59534 5.71424 5.82577 5.94839 6.14711 6.16132 6.29439 6.39345 6.44679 6.59186 6.67428 6.71628 6.79921 7.26477 7.61431 7.80112 8.53319 8.63851 9.18293 9.54884 10.62692 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.006674 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.072425 B = 4194.156550 C = 4910.923716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.093 3.907 3 Si 0.914 3.086 4 H -0.249 1.249 5 H -0.306 1.306 6 H -0.279 1.279 7 C -0.345 4.345 8 H 0.106 0.894 9 N -0.405 5.405 10 C 0.499 3.501 11 O -0.525 6.525 12 C 0.025 3.975 13 C -0.164 4.164 14 C -0.129 4.129 15 C -0.070 4.070 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.107 4.107 19 C 0.047 3.953 20 O -0.178 6.178 21 C 0.054 3.946 22 C -0.170 4.170 23 C -0.191 4.191 24 H 0.277 0.723 25 H 0.164 0.836 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.883 -3.040 -2.555 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.119 4.119 3 Si 0.745 3.255 4 H -0.175 1.175 5 H -0.235 1.235 6 H -0.205 1.205 7 C -0.471 4.471 8 H 0.123 0.877 9 N -0.121 5.121 10 C 0.290 3.710 11 O -0.410 6.410 12 C -0.025 4.025 13 C -0.185 4.185 14 C -0.130 4.130 15 C -0.088 4.088 16 C -0.160 4.160 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.001 4.001 20 O -0.080 6.080 21 C -0.051 4.051 22 C -0.207 4.207 23 C -0.230 4.230 24 H 0.087 0.913 25 H 0.182 0.818 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.216 -2.782 -2.554 16.650 hybrid contribution 0.417 0.838 -0.021 0.937 sum 16.634 -1.943 -2.576 16.944 Atomic orbital electron populations 1.69715 1.06946 1.28860 1.42406 1.25399 0.95024 0.99811 0.91624 0.86286 0.79092 0.81588 0.78559 1.17476 1.23516 1.20462 1.18900 0.83618 0.96673 1.47887 0.87659 1.43082 1.08339 1.39554 1.21141 1.16770 0.83567 0.87928 0.82725 1.90706 1.50358 1.41111 1.58817 1.22847 0.88939 0.96522 0.94234 1.22549 0.92133 1.04625 0.99213 1.19987 0.94379 1.01687 0.96923 1.20327 0.91511 0.98966 0.98025 1.20699 0.96719 1.00063 0.98541 1.20873 0.98343 0.98676 0.94028 1.19937 0.88224 1.02884 1.01479 1.19944 0.87888 0.99847 0.92395 1.84351 1.15893 1.61597 1.46133 1.22168 0.95241 0.99664 0.88034 1.23163 1.01734 0.94455 1.01386 1.23230 0.99855 0.99610 1.00274 0.91262 0.81834 0.85621 0.85653 0.85126 0.85180 0.85520 0.86971 0.89188 0.89261 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.02 13.95 55.50 0.77 -24.24 16 2 C 0.09 2.69 4.84 -17.44 -0.08 2.61 16 3 Si 0.91 24.35 24.71 -169.99 -4.20 20.15 16 4 H -0.25 -6.92 6.23 56.52 0.35 -6.57 16 5 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 7 C -0.35 -9.52 8.67 -15.03 -0.13 -9.65 16 8 H 0.11 2.97 7.06 -52.49 -0.37 2.60 16 9 N -0.40 -10.03 2.50 -109.17 -0.27 -10.30 16 10 C 0.50 12.61 6.01 -12.79 -0.08 12.53 16 11 O -0.52 -14.81 11.87 5.18 0.06 -14.74 16 12 C 0.02 0.53 6.79 -36.94 -0.25 0.28 16 13 C -0.16 -3.12 10.81 -37.20 -0.40 -3.52 16 14 C -0.13 -2.12 6.38 -105.19 -0.67 -2.79 16 15 C -0.07 -0.91 10.06 -39.61 -0.40 -1.31 16 16 C -0.14 -1.53 9.98 -39.94 -0.40 -1.93 16 17 C -0.10 -1.07 10.01 -39.51 -0.40 -1.46 16 18 C -0.11 -1.36 10.07 -39.45 -0.40 -1.76 16 19 C 0.05 0.78 7.41 -38.35 -0.28 0.50 16 20 O -0.18 -3.37 7.06 2.70 0.02 -3.35 16 21 C 0.05 1.08 5.39 -67.94 -0.37 0.71 16 22 C -0.17 -2.97 9.79 -26.74 -0.26 -3.24 16 23 C -0.19 -3.43 10.37 -26.73 -0.28 -3.71 16 24 H 0.28 7.69 8.31 -40.82 -0.34 7.36 16 25 H 0.16 2.94 8.06 -52.49 -0.42 2.51 16 26 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.13 2.37 5.46 -51.93 -0.28 2.08 16 31 H 0.11 2.17 6.54 -51.93 -0.34 1.83 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 289.20 15.07 4.36 4.36 Total: -1.00 -32.02 289.20 -7.22 -39.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.56 Total: 1.62 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -4.40 Total: -12.73 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.50 Total: -34.55 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.08 Total: -18.09 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.20 Total: 20.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.02 -7.22 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299186296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.010 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds