Wall clock time and date at job start Mon Mar 30 2020 01:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31518 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46902 * 89.99661 * 8 6 4 10 10 H 1.48490 * 109.46941 * 209.99634 * 8 6 4 11 11 H 1.48503 * 109.46825 * 329.99720 * 8 6 4 12 12 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 13 13 C 1.34777 * 120.00271 * 274.99861 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.35047 * 126.03732 * 124.99681 * 17 16 15 19 19 C 1.35374 * 107.72715 * 179.97438 * 18 17 16 20 20 Cl 1.73606 * 126.04495 * 179.97438 * 19 18 17 21 21 C 1.39930 * 107.90732 * 0.02562 * 19 18 17 22 22 N 1.30848 * 108.21317 * 359.75705 * 21 19 18 23 23 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 24 24 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 26 26 H 0.97007 * 119.99216 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00266 * 95.00444 * 12 2 1 28 28 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 29 29 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 30 30 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 31 31 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 32 32 H 1.07996 * 126.13783 * 359.94856 * 18 17 16 33 33 H 1.08004 * 125.89055 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 6 2.7006 0.2546 4.7589 17 7 3.1900 -0.4357 5.9547 18 6 4.2434 -0.0620 6.7127 19 6 4.3655 -0.9586 7.7195 20 17 5.5671 -0.9305 8.9723 21 6 3.3527 -1.9127 7.5712 22 7 2.6450 -1.5973 6.5168 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7083 1.1608 -3.4845 27 1 2.2491 -1.6317 1.1527 28 1 3.6492 -1.1202 3.3980 29 1 1.9777 -1.5508 3.8325 30 1 3.3726 1.0771 4.5140 31 1 1.7012 0.6460 4.9483 32 1 4.8753 0.7976 6.5453 33 1 3.1822 -2.7609 8.2178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299690299.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:22 Heat of formation + Delta-G solvation = 24.504293 kcal Electronic energy + Delta-G solvation = -17709.410237 eV Core-core repulsion = 14604.648819 eV Total energy + Delta-G solvation = -3104.761419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46180 -39.07551 -36.62754 -35.09228 -34.13785 -32.46765 -30.83254 -29.77700 -28.53199 -25.33081 -24.65732 -21.53595 -21.40017 -20.62043 -19.48913 -17.79327 -17.01495 -15.91606 -15.65952 -15.43784 -14.96007 -14.61430 -14.35293 -14.08985 -13.54539 -13.14428 -12.96883 -12.60192 -12.34790 -11.89212 -11.75715 -11.62742 -11.34189 -11.15011 -10.98045 -10.78931 -10.65472 -10.38310 -10.28817 -9.78672 -9.22473 -9.10700 -8.63621 -8.60100 -8.02136 -6.17752 -4.27426 1.53227 1.75328 2.37388 2.59005 3.20547 3.22642 3.28104 3.30092 3.92109 4.29509 4.47435 4.52593 4.74909 4.83012 5.14495 5.18774 5.26047 5.35884 5.52208 5.68060 5.77131 6.14680 6.61740 6.76130 6.90014 7.08265 7.33112 7.35694 7.47268 7.62780 7.84163 8.08773 8.54988 8.69820 8.99075 9.40176 10.88186 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.002939 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.837704 B = 9523.994943 C = 9761.190827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.506 3.494 14 O -0.559 6.559 15 C -0.155 4.155 16 C 0.150 3.850 17 N -0.358 5.358 18 C 0.077 3.923 19 C -0.194 4.194 20 Cl -0.048 7.048 21 C 0.060 3.940 22 N -0.279 5.279 23 H 0.091 0.909 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.390 0.610 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -4.123 18.103 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.439 6.439 15 C -0.196 4.196 16 C 0.030 3.970 17 N -0.139 5.139 18 C -0.072 4.072 19 C -0.233 4.233 20 Cl -0.020 7.020 21 C -0.126 4.126 22 N -0.100 5.100 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.223 0.777 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.201 0.799 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.259 -3.382 17.170 18.273 hybrid contribution 1.239 -0.735 -0.260 1.464 sum 6.498 -4.117 16.909 18.577 Atomic orbital electron populations 1.22085 0.98368 0.99199 1.00971 1.18778 0.91103 0.93982 0.79917 0.93281 1.21213 1.32606 1.13286 0.90320 0.92051 1.24895 0.94779 0.94928 0.99107 1.69904 1.35780 1.22401 1.23963 0.86432 0.79187 0.79278 0.82121 1.20502 1.21025 1.19836 1.46538 1.64489 1.13677 1.10476 1.20096 0.78902 0.87386 0.84616 1.90677 1.51938 1.16037 1.85268 1.21909 1.04281 1.00002 0.93392 1.21619 1.02705 0.93344 0.79343 1.48733 1.22447 1.20569 1.22183 1.22326 0.92435 1.00221 0.92220 1.20763 1.00976 1.02684 0.98879 1.98320 1.54596 1.98472 1.50655 1.23871 0.92942 0.99606 0.96228 1.77500 1.21456 1.00104 1.10985 0.89073 0.95416 0.96621 0.92513 0.77713 0.88805 0.87909 0.87272 0.88237 0.79935 0.79339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.93 8.73 -34.44 -0.30 -14.24 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 12 N -0.70 -13.97 5.07 -54.93 -0.28 -14.24 16 13 C 0.51 9.21 7.79 -10.98 -0.09 9.12 16 14 O -0.56 -12.17 15.64 5.56 0.09 -12.09 16 15 C -0.15 -2.01 5.89 -27.88 -0.16 -2.18 16 16 C 0.15 1.77 5.80 -4.04 -0.02 1.75 16 17 N -0.36 -4.13 3.68 -61.33 -0.23 -4.36 16 18 C 0.08 0.76 11.43 -17.16 -0.20 0.56 16 19 C -0.19 -1.97 6.65 -39.97 -0.27 -2.24 16 20 Cl -0.05 -0.44 29.30 -51.86 -1.52 -1.96 16 21 C 0.06 0.63 12.02 -17.34 -0.21 0.42 16 22 N -0.28 -3.49 12.42 30.64 0.38 -3.11 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 6.70 8.54 -40.82 -0.35 6.36 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.11 1.17 8.03 -51.93 -0.42 0.75 16 31 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -30.46 306.77 -6.47 -36.93 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.97 Total: 4.82 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.17 Total: -2.04 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.50 Total: -45.61 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.52 Total: -1.96 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.46 -6.47 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690299.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.433 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds