Wall clock time and date at job start Mon Mar 30 2020 01:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31518 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46902 * 89.99661 * 8 6 4 10 10 H 1.48490 * 109.46941 * 209.99634 * 8 6 4 11 11 H 1.48503 * 109.46825 * 329.99720 * 8 6 4 12 12 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 13 13 C 1.34777 * 120.00271 * 274.99861 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.35047 * 126.03732 * 124.99681 * 17 16 15 19 19 C 1.35374 * 107.72715 * 179.97438 * 18 17 16 20 20 Cl 1.73606 * 126.04495 * 179.97438 * 19 18 17 21 21 C 1.39930 * 107.90732 * 0.02562 * 19 18 17 22 22 N 1.30848 * 108.21317 * 359.75705 * 21 19 18 23 23 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 24 24 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 26 26 H 0.97007 * 119.99216 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00266 * 95.00444 * 12 2 1 28 28 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 29 29 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 30 30 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 31 31 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 32 32 H 1.07996 * 126.13783 * 359.94856 * 18 17 16 33 33 H 1.08004 * 125.89055 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1403 -5.1119 11 1 3.6310 -1.7566 -3.7118 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 6 2.7006 0.2546 4.7589 17 7 3.1900 -0.4357 5.9547 18 6 4.2434 -0.0620 6.7127 19 6 4.3655 -0.9586 7.7195 20 17 5.5671 -0.9305 8.9723 21 6 3.3527 -1.9127 7.5712 22 7 2.6450 -1.5973 6.5168 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7083 1.1608 -3.4845 27 1 2.2491 -1.6317 1.1527 28 1 3.6492 -1.1202 3.3980 29 1 1.9777 -1.5508 3.8325 30 1 3.3726 1.0771 4.5140 31 1 1.7012 0.6460 4.9483 32 1 4.8753 0.7976 6.5453 33 1 3.1822 -2.7609 8.2178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299690299.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:21 Heat of formation + Delta-G solvation = 4.557937 kcal Electronic energy + Delta-G solvation = -17710.275176 eV Core-core repulsion = 14604.648819 eV Total energy + Delta-G solvation = -3105.626358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.27119 -40.61998 -37.36907 -36.83865 -35.21296 -34.33492 -31.91325 -30.98274 -29.91851 -27.35383 -25.76353 -23.02712 -22.20115 -21.76443 -21.08376 -19.04207 -18.38557 -17.27705 -17.17608 -16.88548 -16.28312 -15.71346 -15.55328 -15.24848 -14.53115 -14.51187 -14.32795 -14.16063 -13.64158 -13.46626 -13.02626 -12.86950 -12.72436 -12.69762 -12.43463 -12.30269 -12.23445 -12.14767 -11.43546 -11.11177 -10.85392 -10.62410 -10.55954 -9.77750 -9.41911 -8.18824 -6.36182 0.74209 0.95397 1.44839 1.45249 1.55755 1.60683 1.75397 1.78418 2.35181 2.62625 3.11857 3.51235 3.70284 3.84850 3.96506 4.10885 4.34479 4.42432 4.61326 4.72040 4.74948 4.79971 4.92010 5.08931 5.38844 5.42610 5.59484 5.67624 5.81149 5.88133 6.09205 6.53113 6.71795 6.91051 7.30916 7.50493 8.87333 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043614 B = 0.002939 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.837704 B = 9523.994943 C = 9761.190827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.705 5.705 13 C 0.506 3.494 14 O -0.597 6.597 15 C -0.134 4.134 16 C 0.156 3.844 17 N -0.367 5.367 18 C 0.079 3.921 19 C -0.204 4.204 20 Cl -0.040 7.040 21 C 0.063 3.937 22 N -0.313 5.313 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.014 0.986 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.210 0.790 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -5.614 18.863 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.479 6.479 15 C -0.174 4.174 16 C 0.035 3.965 17 N -0.148 5.148 18 C -0.069 4.069 19 C -0.242 4.242 20 Cl -0.012 7.012 21 C -0.124 4.124 22 N -0.134 5.134 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.241 0.759 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.106 0.894 32 H 0.227 0.773 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.558 -4.910 17.967 19.747 hybrid contribution 0.863 -0.242 -0.392 0.979 sum 7.422 -5.152 17.575 19.761 Atomic orbital electron populations 1.21915 0.98390 0.99429 0.99689 1.18350 0.91055 0.92063 0.81875 0.97935 1.21560 1.32623 1.13573 0.90876 0.90895 1.25791 0.94892 0.95561 1.02322 1.70051 1.36960 1.23899 1.24624 0.85352 0.78981 0.78029 0.78029 1.19777 1.21231 1.18790 1.46298 1.64863 1.14353 1.09801 1.20907 0.77570 0.86954 0.85354 1.90661 1.53289 1.18034 1.85931 1.21740 1.05136 0.99714 0.90853 1.21480 1.02625 0.93222 0.79190 1.48634 1.23088 1.20758 1.22317 1.22813 0.91837 1.00675 0.91541 1.20892 1.01267 1.02796 0.99277 1.98325 1.54183 1.98456 1.50250 1.24326 0.92318 1.00009 0.95706 1.77466 1.22724 1.01028 1.12207 0.91521 0.94239 0.96685 0.92535 0.75933 0.86734 0.86986 0.86163 0.89387 0.77343 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.59 2.56 44.25 0.11 13.70 16 3 H 0.00 0.16 7.58 -2.38 -0.02 0.14 16 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.01 0.77 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.86 11.32 21.45 0.24 -51.62 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.70 -27.59 5.07 -446.10 -2.26 -29.85 16 13 C 0.51 18.13 7.79 87.66 0.68 18.82 16 14 O -0.60 -26.33 15.64 -3.02 -0.05 -26.37 16 15 C -0.13 -3.24 5.89 29.85 0.18 -3.06 16 16 C 0.16 3.46 5.80 86.38 0.50 3.96 16 17 N -0.37 -7.78 3.68 -347.95 -1.28 -9.06 16 18 C 0.08 1.39 11.43 83.54 0.95 2.34 16 19 C -0.20 -3.69 6.65 22.02 0.15 -3.54 16 20 Cl -0.04 -0.65 29.30 -2.72 -0.08 -0.73 16 21 C 0.06 1.18 12.02 85.25 1.02 2.21 16 22 N -0.31 -7.29 12.42 -56.98 -0.71 -8.00 16 23 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 24 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.27 14.22 8.31 -92.70 -0.77 13.44 16 27 H 0.41 13.34 8.54 -92.70 -0.79 12.54 16 28 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 30 H 0.12 2.39 8.03 -2.39 -0.02 2.37 16 31 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 32 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.21 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -65.95 306.77 3.17 -62.78 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.34 Total: 18.10 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.94 Total: 1.40 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -4.01 Total: -98.52 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -65.95 3.17 -62.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690299.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.337 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds