Wall clock time and date at job start Mon Mar 30 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 N 1.46497 * 109.47134 * 179.97438 * 16 15 13 18 18 C 1.35050 * 126.03767 * 124.99871 * 17 16 15 19 19 C 1.35375 * 107.72822 * 179.97438 * 18 17 16 20 20 Cl 1.73592 * 126.04455 * 179.97438 * 19 18 17 21 21 C 1.39930 * 107.90613 * 359.97438 * 19 18 17 22 22 N 1.30856 * 108.21555 * 359.75702 * 21 19 18 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 28 28 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 31 31 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 32 32 H 1.07997 * 126.13586 * 359.93603 * 18 17 16 33 33 H 1.08004 * 125.89152 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 7 3.1893 -0.4356 -5.9550 18 6 2.5628 -0.4944 -7.1499 19 6 3.3387 -1.2226 -7.9868 20 17 2.9830 -1.5953 -9.6445 21 6 4.4780 -1.6217 -7.2792 22 7 4.3919 -1.1458 -6.0633 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 2.2490 -1.6317 -1.1527 28 1 3.6480 -1.1211 -3.3986 29 1 1.9760 -1.5503 -3.8327 30 1 1.7019 0.6477 -4.9480 31 1 3.3741 1.0764 -4.5137 32 1 1.6129 -0.0422 -7.3938 33 1 5.2905 -2.2159 -7.6706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299690301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:23 Heat of formation + Delta-G solvation = 4.514042 kcal Electronic energy + Delta-G solvation = -17710.224934 eV Core-core repulsion = 14604.596673 eV Total energy + Delta-G solvation = -3105.628261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.27000 -40.61911 -37.36890 -36.83786 -35.21239 -34.33599 -31.91294 -30.98024 -29.91771 -27.35144 -25.76249 -23.02791 -22.19768 -21.76069 -21.08635 -19.04424 -18.38779 -17.27715 -17.20517 -16.83739 -16.23906 -15.86826 -15.45377 -15.23762 -14.64881 -14.47696 -14.26306 -14.12209 -13.66739 -13.47117 -12.99729 -12.89811 -12.77127 -12.63985 -12.43981 -12.29617 -12.23218 -12.15282 -11.43362 -11.11094 -10.85358 -10.61664 -10.56745 -9.77634 -9.41804 -8.19068 -6.36297 0.74425 0.95498 1.44274 1.45065 1.55403 1.60712 1.75439 1.78463 2.35102 2.62572 3.11574 3.51496 3.70227 3.84815 3.96687 4.10868 4.34134 4.42786 4.61358 4.71856 4.75712 4.80459 4.92516 5.09105 5.38740 5.43138 5.59434 5.68006 5.81458 5.88630 6.09608 6.53257 6.71675 6.91096 7.30786 7.50483 8.87055 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.049743 B = 0.002919 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.756712 B = 9589.898813 C = 9875.458729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.287 1.287 12 N -0.705 5.705 13 C 0.506 3.494 14 O -0.597 6.597 15 C -0.134 4.134 16 C 0.156 3.844 17 N -0.367 5.367 18 C 0.080 3.920 19 C -0.204 4.204 20 Cl -0.040 7.040 21 C 0.063 3.937 22 N -0.314 5.314 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.266 0.734 27 H 0.406 0.594 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.211 0.789 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -6.737 -20.034 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.212 1.212 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.479 6.479 15 C -0.174 4.174 16 C 0.035 3.965 17 N -0.148 5.148 18 C -0.068 4.068 19 C -0.242 4.242 20 Cl -0.012 7.012 21 C -0.124 4.124 22 N -0.135 5.135 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.241 0.759 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.519 -5.663 -18.764 19.913 hybrid contribution -0.177 -0.519 0.121 0.562 sum 3.342 -6.182 -18.642 19.923 Atomic orbital electron populations 1.21900 0.98140 0.99496 0.99766 1.18353 0.91221 0.91968 0.81850 0.98122 1.21564 1.32618 1.13569 0.90933 0.90979 1.25784 0.94898 0.95566 1.02298 1.70045 1.36987 1.23842 1.24625 0.85362 0.78964 0.78062 0.78057 1.19645 1.18926 1.21236 1.46298 1.64860 1.14356 1.09799 1.20907 0.77485 0.86964 0.85428 1.90661 1.53284 1.17976 1.85992 1.21740 1.05065 0.99585 0.91053 1.21483 1.01927 0.92978 0.80135 1.48635 1.15215 1.40904 1.10042 1.22819 1.00033 0.99098 0.84853 1.20890 1.00331 1.13378 0.89644 1.98324 1.94712 1.93852 1.14302 1.24327 0.98688 0.99336 0.90029 1.77480 1.02039 1.13761 1.20239 0.96468 0.94133 0.91589 0.92527 0.75937 0.87204 0.86523 0.85994 0.89552 0.77261 0.77127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.56 2.56 44.24 0.11 13.68 16 3 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 4 C -0.55 -28.55 8.73 25.60 0.22 -28.32 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -51.90 11.32 21.45 0.24 -51.66 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.70 -27.59 5.07 -446.10 -2.26 -29.85 16 13 C 0.51 18.13 7.79 87.66 0.68 18.82 16 14 O -0.60 -26.32 15.64 -3.02 -0.05 -26.37 16 15 C -0.13 -3.24 5.89 29.85 0.18 -3.06 16 16 C 0.16 3.45 5.80 86.38 0.50 3.95 16 17 N -0.37 -7.77 3.68 -347.93 -1.28 -9.05 16 18 C 0.08 1.38 11.43 83.54 0.95 2.34 16 19 C -0.20 -3.68 6.65 22.02 0.15 -3.53 16 20 Cl -0.04 -0.64 29.30 -2.72 -0.08 -0.72 16 21 C 0.06 1.19 12.02 85.25 1.02 2.21 16 22 N -0.31 -7.38 12.42 -56.97 -0.71 -8.09 16 23 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.41 13.34 8.54 -92.70 -0.79 12.55 16 28 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.12 2.37 8.03 -2.38 -0.02 2.35 16 31 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 32 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -66.20 306.78 3.17 -63.03 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.34 Total: 17.77 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.94 Total: 1.39 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -4.01 Total: -98.66 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -66.20 3.17 -63.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299690301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.547 kcal (2) G-P(sol) polarization free energy of solvation -66.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds