Wall clock time and date at job start Mon Mar 30 2020 01:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47244 * 2 1 4 4 N 1.46898 * 109.46967 * 239.99813 * 2 1 3 5 5 C 1.46907 * 110.99885 * 85.00251 * 4 2 1 6 6 C 1.53001 * 109.46852 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46627 * 180.02562 * 6 5 4 8 8 S 1.81008 * 109.46853 * 179.97438 * 7 6 5 9 9 C 1.76203 * 99.99750 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00110 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99596 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00334 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99594 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47260 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46728 * 120.00616 * 13 11 9 16 16 H 1.48493 * 109.46965 * 240.00065 * 13 11 9 17 17 C 1.50697 * 109.46873 * 120.00134 * 2 1 3 18 18 C 1.38421 * 122.53935 * 259.99502 * 17 2 1 19 19 C 1.33388 * 114.92066 * 179.72463 * 18 17 2 20 20 S 1.75885 * 109.59458 * 0.27968 * 19 18 17 21 21 C 1.33395 * 122.53872 * 80.25562 * 17 2 1 22 22 H 1.09003 * 109.47194 * 300.00160 * 1 2 3 23 23 H 1.09003 * 109.46908 * 59.99815 * 1 2 3 24 24 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.00901 * 111.00324 * 321.05126 * 4 2 1 26 26 H 1.08993 * 109.47347 * 300.00015 * 5 4 2 27 27 H 1.09006 * 109.46786 * 59.99997 * 5 4 2 28 28 H 1.09001 * 109.47459 * 299.99910 * 6 5 4 29 29 H 1.08993 * 109.47603 * 60.00627 * 6 5 4 30 30 H 1.08993 * 109.47418 * 300.00052 * 7 6 5 31 31 H 1.09002 * 109.47422 * 60.00193 * 7 6 5 32 32 H 0.97001 * 120.00178 * 179.97438 * 12 11 9 33 33 H 1.08002 * 122.54201 * 0.02562 * 18 17 2 34 34 H 1.08004 * 125.20514 * 180.24987 * 19 18 17 35 35 H 1.07998 * 125.20353 * 359.97100 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5962 -0.5330 -3.5742 7 6 2.6622 0.4204 -4.7691 8 16 3.2707 -0.4732 -6.2209 9 6 3.2460 0.8251 -7.4118 10 1 2.9173 1.8135 -7.1264 11 6 3.6501 0.5778 -8.7164 12 7 4.0512 -0.6266 -9.0641 13 14 3.6246 1.9545 -9.9789 14 1 3.1368 3.2031 -9.3399 15 1 4.9971 2.1707 -10.5031 16 1 2.7203 1.5841 -11.0970 17 6 2.0323 -0.7104 1.2304 18 6 2.4716 -0.0324 2.3544 19 6 2.8778 -0.8117 3.3579 20 16 2.7197 -2.5010 2.8941 21 6 2.0920 -2.0402 1.3170 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.4495 -1.4979 -1.4101 26 1 1.0872 0.6164 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5917 -0.9264 -3.3683 29 1 1.9202 -1.3567 -3.8031 30 1 1.6670 0.8142 -4.9752 31 1 3.3386 1.2439 -4.5400 32 1 4.3333 -0.7995 -9.9760 33 1 2.4800 1.0458 2.4162 34 1 3.2478 -0.4594 4.3094 35 1 1.7957 -2.7287 0.5394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309158704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:42 Heat of formation + Delta-G solvation = -4.164261 kcal Electronic energy + Delta-G solvation = -15406.079447 eV Core-core repulsion = 12848.411788 eV Total energy + Delta-G solvation = -2557.667660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84751 -37.34086 -34.63476 -34.37359 -30.78136 -29.62313 -27.83464 -26.16194 -25.39343 -22.51623 -22.20826 -19.62911 -19.39382 -18.58374 -16.89982 -16.84909 -16.49905 -16.33336 -15.54947 -15.26451 -14.80425 -14.50289 -14.19431 -13.77112 -13.66643 -13.38024 -13.24302 -13.19277 -13.05313 -12.91812 -12.61788 -12.44217 -12.25709 -12.19716 -11.77416 -11.55205 -11.29157 -11.15431 -10.31132 -9.61899 -9.40216 -9.18116 -8.66560 -8.37494 -6.13710 0.20064 0.85254 1.16631 1.31629 1.38415 1.49643 1.74506 1.86209 2.28455 2.96742 3.17514 3.36107 3.92896 4.05545 4.12626 4.26629 4.32935 4.35280 4.41262 4.52186 4.54943 4.74076 4.78599 4.82456 4.90611 4.92036 5.17020 5.21190 5.23468 5.33693 5.39929 5.51246 5.65020 6.10955 6.18339 6.45567 7.04799 8.72233 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.046547 B = 0.002671 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.395286 B =10479.104577 C =10735.858695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.144 3.856 3 H 0.087 0.913 4 N -0.688 5.688 5 C 0.078 3.922 6 C -0.084 4.084 7 C -0.087 4.087 8 S -0.201 6.201 9 C -0.537 4.537 10 H 0.073 0.927 11 C 0.013 3.987 12 N -0.908 5.908 13 Si 0.995 3.005 14 H -0.262 1.262 15 H -0.272 1.272 16 H -0.271 1.271 17 C -0.097 4.097 18 C -0.140 4.140 19 C -0.215 4.215 20 S 0.079 5.921 21 C -0.203 4.203 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.345 0.655 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.271 0.729 33 H 0.152 0.848 34 H 0.183 0.817 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 0.949 24.533 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.032 3.968 3 H 0.105 0.895 4 N -0.319 5.319 5 C -0.053 4.053 6 C -0.123 4.123 7 C -0.236 4.236 8 S 0.027 5.973 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.191 4.191 12 N -0.545 5.545 13 Si 0.817 3.183 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.196 1.196 17 C -0.110 4.110 18 C -0.171 4.171 19 C -0.350 4.350 20 S 0.343 5.657 21 C -0.339 4.339 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.170 0.830 34 H 0.201 0.799 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.124 -1.568 25.168 25.732 hybrid contribution -1.368 3.089 -1.780 3.818 sum -6.492 1.521 23.388 24.320 Atomic orbital electron populations 1.22414 0.95208 1.02653 1.02717 1.20134 0.93193 0.96856 0.86648 0.89491 1.60499 1.57949 1.09955 1.03470 1.21823 0.99628 0.95021 0.88846 1.21124 1.02135 0.97274 0.91742 1.23152 1.02293 1.01219 0.96972 1.84667 1.86424 1.21097 1.05074 1.23072 1.51231 0.97067 0.97077 0.90916 1.26091 0.93817 0.99211 1.00005 1.70163 1.42186 1.22321 1.19793 0.84951 0.78353 0.77675 0.77294 1.18603 1.19701 1.19632 1.18962 1.02465 0.93134 0.96454 1.20269 1.02118 1.02003 0.92725 1.25842 1.09143 0.95316 1.04690 1.84256 1.63689 1.08073 1.09731 1.25486 1.08696 0.99074 1.00632 0.91105 0.92231 0.92125 0.83589 0.94214 0.90994 0.91852 0.91766 0.91849 0.92006 0.91969 0.82997 0.79931 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.14 71.98 0.66 -1.98 16 2 C 0.14 2.63 2.88 44.17 0.13 2.75 16 3 H 0.09 1.58 7.74 -2.39 -0.02 1.56 16 4 N -0.69 -14.85 5.80 -495.44 -2.87 -17.73 16 5 C 0.08 1.90 5.48 86.30 0.47 2.37 16 6 C -0.08 -2.67 5.48 30.60 0.17 -2.50 16 7 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 8 S -0.20 -10.85 21.44 -56.49 -1.21 -12.06 16 9 C -0.54 -31.29 9.50 67.95 0.65 -30.65 16 10 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 11 C 0.01 0.78 5.49 84.86 0.47 1.24 16 12 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 13 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 17 C -0.10 -1.83 4.86 -20.92 -0.10 -1.94 16 18 C -0.14 -2.35 9.95 21.22 0.21 -2.14 16 19 C -0.21 -3.30 11.23 66.72 0.75 -2.55 16 20 S 0.08 1.33 23.34 -56.49 -1.32 0.02 16 21 C -0.20 -3.85 10.51 66.72 0.70 -3.14 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 0.94 7.45 -2.39 -0.02 0.92 16 24 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 25 H 0.35 6.91 8.22 -89.69 -0.74 6.17 16 26 H 0.04 0.91 7.44 -2.39 -0.02 0.89 16 27 H 0.07 1.78 8.06 -2.38 -0.02 1.76 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.16 2.90 7.80 -2.91 -0.02 2.88 16 Total: -1.00 -66.66 322.65 1.75 -64.92 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.33 Total: 15.30 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 4.51 Total: -41.62 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -2.59 Total: -72.77 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -9.51 SS G_CDS: -2.53 Total: -12.04 kcal Total: -66.66 1.75 -64.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309158704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.752 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds