Wall clock time and date at job start Mon Mar 30 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 N 1.46898 * 109.47006 * 119.99780 * 2 1 3 5 5 C 1.46899 * 111.00287 * 274.99842 * 4 2 1 6 6 C 1.52996 * 109.47238 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47190 * 180.02562 * 6 5 4 8 8 S 1.81004 * 109.47322 * 180.02562 * 7 6 5 9 9 C 1.76198 * 99.99898 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99767 * 0.02562 * 9 8 7 11 11 C 1.38793 * 119.99940 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99951 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00250 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46924 * 90.00347 * 13 11 9 15 15 H 1.48496 * 109.47350 * 210.00357 * 13 11 9 16 16 H 1.48500 * 109.46994 * 330.00613 * 13 11 9 17 17 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 18 18 C 1.38425 * 122.54150 * 99.73464 * 17 2 1 19 19 C 1.33386 * 114.92043 * 179.75898 * 18 17 2 20 20 S 1.75884 * 109.59443 * 0.48212 * 19 18 17 21 21 C 1.33393 * 122.53661 * 280.02639 * 17 2 1 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.00901 * 111.00448 * 38.95578 * 4 2 1 26 26 H 1.09003 * 109.46885 * 299.99985 * 5 4 2 27 27 H 1.08998 * 109.46804 * 59.99764 * 5 4 2 28 28 H 1.09003 * 109.46928 * 299.99661 * 6 5 4 29 29 H 1.09001 * 109.47349 * 59.99580 * 6 5 4 30 30 H 1.09003 * 109.46799 * 299.99606 * 7 6 5 31 31 H 1.08998 * 109.46937 * 59.99415 * 7 6 5 32 32 H 0.97002 * 120.00545 * 179.97438 * 12 11 9 33 33 H 1.07996 * 122.53568 * 0.02562 * 18 17 2 34 34 H 1.08002 * 125.19970 * 180.21217 * 19 18 17 35 35 H 1.07995 * 125.20912 * 359.97438 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5963 -0.5328 3.5741 7 6 2.6611 0.4201 4.7694 8 16 3.2696 -0.4734 6.2212 9 6 3.2449 0.8250 7.4120 10 1 2.9153 1.8132 7.1268 11 6 3.6480 0.5776 8.7169 12 7 4.0491 -0.6269 9.0646 13 14 3.6225 1.9542 9.9793 14 1 2.3008 1.9808 10.6560 15 1 4.6893 1.7225 10.9860 16 1 3.8569 3.2535 9.2996 17 6 2.0323 -0.7105 -1.2304 18 6 2.4665 -0.0326 -2.3566 19 6 2.8837 -0.8118 -3.3556 20 16 2.7229 -2.5010 -2.8928 21 6 2.0869 -2.0403 -1.3190 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.4496 -1.4979 1.4101 26 1 2.7590 1.0462 2.1182 27 1 1.0872 0.6164 2.5525 28 1 1.9201 -1.3566 3.8030 29 1 3.5917 -0.9263 3.3682 30 1 3.3370 1.2442 4.5408 31 1 1.6655 0.8132 4.9751 32 1 4.3312 -0.7999 9.9765 33 1 2.4714 1.0455 -2.4197 34 1 3.2584 -0.4593 -4.3052 35 1 1.7868 -2.7289 -0.5430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309158705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:44 Heat of formation + Delta-G solvation = 14.182016 kcal Electronic energy + Delta-G solvation = -15405.094205 eV Core-core repulsion = 12848.222100 eV Total energy + Delta-G solvation = -2556.872105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08316 -36.39774 -33.25386 -32.41134 -29.79594 -28.88179 -25.73371 -25.11541 -24.38894 -21.45757 -21.18400 -18.74364 -17.85958 -17.43069 -15.87320 -15.54979 -14.94796 -14.78906 -14.38142 -14.06971 -13.56562 -13.48600 -13.03934 -12.78106 -12.69506 -12.55690 -12.10989 -12.00127 -11.51197 -11.49074 -11.29821 -11.06074 -10.82942 -10.75923 -10.59306 -10.40562 -9.52037 -9.04577 -8.91715 -8.57546 -8.39265 -8.28049 -6.50935 -6.21348 -3.91420 0.90157 1.53785 1.86071 2.56803 3.22222 3.23199 3.29957 3.57094 4.14414 4.24640 4.68531 4.86137 4.99134 5.06969 5.14530 5.17693 5.28625 5.37889 5.41810 5.52524 5.58861 5.60779 5.75357 5.85352 5.89155 5.97217 6.10187 6.22632 6.35077 6.37460 6.62232 6.76141 7.03837 7.33646 7.61816 8.38016 9.24859 10.86870 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.046521 B = 0.002671 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.739966 B =10478.675868 C =10735.557633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.142 3.858 3 H 0.086 0.914 4 N -0.682 5.682 5 C 0.064 3.936 6 C -0.095 4.095 7 C -0.112 4.112 8 S -0.133 6.133 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.089 4.089 18 C -0.126 4.126 19 C -0.216 4.216 20 S 0.079 5.921 21 C -0.187 4.187 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.340 0.660 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -0.411 -23.593 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.029 3.971 3 H 0.104 0.896 4 N -0.312 5.312 5 C -0.066 4.066 6 C -0.134 4.134 7 C -0.261 4.261 8 S 0.095 5.905 9 C -0.664 4.664 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.506 5.506 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.101 4.101 18 C -0.158 4.158 19 C -0.352 4.352 20 S 0.342 5.658 21 C -0.323 4.323 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.536 -2.922 -24.205 24.799 hybrid contribution -1.558 3.559 1.603 4.203 sum -6.094 0.637 -22.602 23.418 Atomic orbital electron populations 1.22485 0.96281 1.02453 1.02391 1.20131 0.92382 0.97089 0.87516 0.89578 1.60558 1.57173 1.09891 1.03569 1.22058 0.99339 0.95412 0.89823 1.21242 1.02456 0.97814 0.91910 1.23220 1.02692 1.01286 0.98923 1.84638 1.85459 1.18796 1.01594 1.22692 1.50919 0.96756 0.96043 0.90997 1.25017 0.94640 0.96425 0.97759 1.70025 1.41399 1.20079 1.19057 0.86167 0.77968 0.81182 0.80212 1.20302 1.20750 1.19695 1.18830 1.02247 0.92977 0.96064 1.20058 1.01798 1.01062 0.92842 1.25511 1.09815 0.95811 1.04024 1.84266 1.63520 1.07433 1.10543 1.25341 1.08149 0.98813 0.99993 0.91949 0.92244 0.92100 0.84123 0.91061 0.95228 0.91867 0.90724 0.92123 0.92364 0.92321 0.84464 0.82109 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.14 37.16 0.34 -1.19 16 2 C 0.14 1.41 2.88 -68.86 -0.20 1.21 16 3 H 0.09 0.87 7.74 -51.93 -0.40 0.46 16 4 N -0.68 -7.86 5.80 -107.96 -0.63 -8.49 16 5 C 0.06 0.84 5.48 -3.83 -0.02 0.81 16 6 C -0.10 -1.55 5.48 -26.73 -0.15 -1.70 16 7 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 8 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 9 C -0.52 -14.93 9.50 30.94 0.29 -14.64 16 10 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 12 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 13 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C -0.09 -0.90 4.86 -106.25 -0.52 -1.42 16 18 C -0.13 -1.18 9.95 -41.21 -0.41 -1.59 16 19 C -0.22 -1.87 11.23 29.04 0.33 -1.54 16 20 S 0.08 0.71 23.34 -107.50 -2.51 -1.80 16 21 C -0.19 -1.87 10.52 29.04 0.31 -1.56 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 24 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 25 H 0.34 3.63 8.23 -39.29 -0.32 3.31 16 26 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 27 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.48 7.80 -52.49 -0.41 1.07 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -31.14 322.67 -10.03 -41.17 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.25 Total: 0.65 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 0.09 Total: -21.74 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.11 Total: -33.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -4.81 Total: -7.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.14 -10.03 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309158705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.357 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds