Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46752 * 2 1 4 4 H 1.09001 * 109.47436 * 305.60313 * 3 2 1 5 5 C 1.50701 * 109.47329 * 185.60234 * 3 2 1 6 6 H 1.07997 * 119.99966 * 245.40927 * 5 3 2 7 7 C 1.37877 * 119.99682 * 65.40289 * 5 3 2 8 8 N 1.31519 * 119.99571 * 197.21917 * 7 5 3 9 9 Si 1.86795 * 120.00186 * 17.21816 * 7 5 3 10 10 H 1.48501 * 109.47194 * 86.81248 * 9 7 5 11 11 H 1.48498 * 109.47321 * 206.81017 * 9 7 5 12 12 H 1.48500 * 109.47318 * 326.81273 * 9 7 5 13 13 N 1.46900 * 109.47177 * 65.60218 * 3 2 1 14 14 C 1.46897 * 111.00490 * 251.61939 * 13 3 2 15 15 C 1.50693 * 109.47342 * 183.54010 * 14 13 3 16 16 C 1.33239 * 125.12516 * 89.72039 * 15 14 13 17 17 C 1.38549 * 114.99280 * 179.85558 * 16 15 14 18 18 C 1.34173 * 114.71111 * 0.42807 * 17 16 15 19 19 S 1.76204 * 125.24540 * 179.79112 * 18 17 16 20 20 C 1.81401 * 102.99963 * 180.02562 * 19 18 17 21 21 S 1.75859 * 125.12069 * 270.01893 * 15 14 13 22 22 H 1.09000 * 109.47629 * 305.16055 * 1 2 3 23 23 H 1.09002 * 109.46784 * 185.16428 * 1 2 3 24 24 H 1.08999 * 109.47411 * 65.16531 * 1 2 3 25 25 H 1.09005 * 109.47470 * 119.99436 * 2 1 3 26 26 H 1.08993 * 109.47642 * 240.00324 * 2 1 3 27 27 H 0.97003 * 119.99602 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99979 * 15.57007 * 13 3 2 29 29 H 1.09002 * 109.46719 * 303.53784 * 14 13 3 30 30 H 1.08996 * 109.47425 * 63.53307 * 14 13 3 31 31 H 1.08001 * 122.50492 * 0.03496 * 16 15 14 32 32 H 1.08003 * 122.64708 * 180.19942 * 17 16 15 33 33 H 1.09001 * 109.47246 * 60.00008 * 20 19 18 34 34 H 1.09002 * 109.46563 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.46921 * 299.99566 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5969 1.9846 -0.8356 5 6 3.5405 1.4450 -0.1387 6 1 4.1570 1.8072 0.6707 7 6 4.1263 0.9847 -1.2989 8 7 5.4022 0.6659 -1.3096 9 14 3.1077 0.8138 -2.8553 10 1 3.0999 2.1065 -3.5862 11 1 3.6975 -0.2399 -3.7197 12 1 1.7160 0.4391 -2.4976 13 7 1.6637 2.0949 1.2613 14 6 0.6034 3.0883 1.0446 15 6 0.3056 3.7961 2.3411 16 6 0.9103 4.9048 2.7658 17 6 0.4694 5.3798 3.9903 18 6 -0.4941 4.6429 4.5639 19 16 -1.2492 4.9883 6.1180 20 6 -2.4423 3.6343 6.3018 21 16 -0.8875 3.2791 3.5251 22 1 -0.3634 0.5918 0.8401 23 1 -0.3633 -1.0235 0.0925 24 1 -0.3634 0.4316 -0.9326 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5137 -0.8899 27 1 5.8144 0.3423 -2.1259 28 1 1.3853 1.4138 1.9517 29 1 0.9325 3.8146 0.3014 30 1 -0.2968 2.5872 0.6890 31 1 1.6843 5.3981 2.1966 32 1 0.8721 6.2708 4.4490 33 1 -1.9139 2.6809 6.2955 34 1 -2.9775 3.7473 7.2446 35 1 -3.1528 3.6614 5.4756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309237577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = 30.989940 kcal Electronic energy + Delta-G solvation = -16185.440306 eV Core-core repulsion = 13629.297047 eV Total energy + Delta-G solvation = -2556.143259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.95539 -36.58069 -32.79343 -31.73060 -29.63468 -29.17760 -27.33061 -24.94686 -22.85916 -22.09367 -20.04853 -19.58947 -17.59999 -16.60940 -16.16922 -15.18682 -15.12277 -14.52529 -14.21018 -14.03331 -13.79024 -13.28744 -13.22604 -12.77214 -12.61944 -12.34844 -12.12906 -11.88812 -11.80174 -11.64678 -10.95635 -10.85010 -10.63500 -10.43619 -10.41085 -9.97386 -9.67231 -9.45785 -9.34013 -8.44304 -8.38692 -7.47296 -7.35034 -6.07012 -3.97832 0.95372 1.21834 1.34371 2.00220 2.39244 2.83232 3.26734 3.35422 3.37842 4.42567 4.76788 4.78158 4.94433 5.18343 5.23687 5.36347 5.47523 5.54105 5.66542 5.77672 5.79613 5.95874 6.01579 6.14773 6.40211 6.43584 6.50743 6.61213 6.69082 6.82142 7.14027 7.74442 7.87453 8.23374 8.70613 9.12257 9.59879 11.06444 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035805 B = 0.004165 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.831187 B = 6720.623037 C = 7100.495312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.500 4.500 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.664 5.664 14 C 0.125 3.875 15 C -0.143 4.143 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.212 4.212 19 S -0.065 6.065 20 C -0.153 4.153 21 S 0.092 5.908 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.328 0.672 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 5.957 11.177 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.085 3.915 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.294 5.294 14 C -0.007 4.007 15 C -0.264 4.264 16 C -0.147 4.147 17 C -0.139 4.139 18 C -0.440 4.440 19 S 0.172 5.828 20 C -0.322 4.322 21 S 0.353 5.647 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.486 5.996 11.945 21.224 hybrid contribution -0.384 -0.633 -2.107 2.233 sum -16.871 5.363 9.839 20.253 Atomic orbital electron populations 1.21955 0.98622 1.00308 1.00477 1.22552 0.92556 1.01378 1.02241 1.19585 0.96908 0.88419 0.86566 0.96120 1.20973 0.89003 1.41507 1.02347 0.90097 1.24899 0.94738 0.94672 0.98620 1.69990 1.11921 1.43325 1.27745 0.87297 0.81760 0.78003 0.84476 1.20541 1.21494 1.18227 1.60685 1.37998 1.18656 1.12108 1.20589 0.93876 0.95649 0.90563 1.24572 1.00530 1.00230 1.01053 1.20071 1.01501 0.97011 0.96152 1.19928 0.97098 1.01173 0.95732 1.25908 1.09160 1.04847 1.04088 1.85102 1.44276 1.36070 1.17401 1.23715 1.01223 1.00551 1.06720 1.84097 1.40896 1.26752 1.12979 0.93854 0.93746 0.93593 0.92213 0.91815 0.92771 0.85509 0.89201 0.95096 0.83462 0.84165 0.89523 0.87096 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.15 -3.07 4.56 -26.73 -0.12 -3.19 16 3 C 0.19 4.39 1.73 -68.86 -0.12 4.27 16 4 H 0.02 0.48 6.15 -51.93 -0.32 0.16 16 5 C -0.50 -13.87 9.25 -34.44 -0.32 -14.19 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 2.06 5.30 -17.82 -0.09 1.96 16 8 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.86 20.77 25.86 -169.99 -4.40 16.37 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.26 -5.82 5.65 56.52 0.32 -5.50 16 13 N -0.66 -13.21 6.02 -109.22 -0.66 -13.87 16 14 C 0.12 2.09 5.57 -4.98 -0.03 2.06 16 15 C -0.14 -2.18 6.04 -36.06 -0.22 -2.39 16 16 C -0.12 -1.69 10.04 -41.21 -0.41 -2.10 16 17 C -0.10 -1.36 10.13 -40.90 -0.41 -1.77 16 18 C -0.21 -2.76 6.69 29.30 0.20 -2.56 16 19 S -0.07 -0.70 22.72 -107.50 -2.44 -3.14 16 20 C -0.15 -1.20 9.84 101.05 0.99 -0.20 16 21 S 0.09 1.22 22.30 -107.50 -2.40 -1.18 16 22 H 0.04 0.67 5.97 -51.93 -0.31 0.36 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 26 H 0.06 1.42 5.17 -51.93 -0.27 1.15 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.33 6.19 7.70 -39.29 -0.30 5.89 16 29 H 0.09 1.54 8.06 -51.93 -0.42 1.12 16 30 H 0.03 0.49 6.61 -51.93 -0.34 0.15 16 31 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -29.72 310.24 -9.61 -39.33 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.98 Total: 4.48 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -0.19 Total: -20.41 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.12 Total: -40.12 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.40 Total: 16.37 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -4.84 Total: -4.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.72 -9.61 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.319 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds