Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46752 * 2 1 4 4 H 1.09001 * 109.47436 * 305.60313 * 3 2 1 5 5 C 1.50701 * 109.47329 * 185.60234 * 3 2 1 6 6 H 1.07997 * 119.99966 * 245.40927 * 5 3 2 7 7 C 1.37877 * 119.99682 * 65.40289 * 5 3 2 8 8 N 1.31519 * 119.99571 * 197.21917 * 7 5 3 9 9 Si 1.86795 * 120.00186 * 17.21816 * 7 5 3 10 10 H 1.48501 * 109.47194 * 86.81248 * 9 7 5 11 11 H 1.48498 * 109.47321 * 206.81017 * 9 7 5 12 12 H 1.48500 * 109.47318 * 326.81273 * 9 7 5 13 13 N 1.46900 * 109.47177 * 65.60218 * 3 2 1 14 14 C 1.46897 * 111.00490 * 251.61939 * 13 3 2 15 15 C 1.50693 * 109.47342 * 183.54010 * 14 13 3 16 16 C 1.33239 * 125.12516 * 89.72039 * 15 14 13 17 17 C 1.38549 * 114.99280 * 179.85558 * 16 15 14 18 18 C 1.34173 * 114.71111 * 0.42807 * 17 16 15 19 19 S 1.76204 * 125.24540 * 179.79112 * 18 17 16 20 20 C 1.81401 * 102.99963 * 180.02562 * 19 18 17 21 21 S 1.75859 * 125.12069 * 270.01893 * 15 14 13 22 22 H 1.09000 * 109.47629 * 305.16055 * 1 2 3 23 23 H 1.09002 * 109.46784 * 185.16428 * 1 2 3 24 24 H 1.08999 * 109.47411 * 65.16531 * 1 2 3 25 25 H 1.09005 * 109.47470 * 119.99436 * 2 1 3 26 26 H 1.08993 * 109.47642 * 240.00324 * 2 1 3 27 27 H 0.97003 * 119.99602 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99979 * 15.57007 * 13 3 2 29 29 H 1.09002 * 109.46719 * 303.53784 * 14 13 3 30 30 H 1.08996 * 109.47425 * 63.53307 * 14 13 3 31 31 H 1.08001 * 122.50492 * 0.03496 * 16 15 14 32 32 H 1.08003 * 122.64708 * 180.19942 * 17 16 15 33 33 H 1.09001 * 109.47246 * 60.00008 * 20 19 18 34 34 H 1.09002 * 109.46563 * 180.02562 * 20 19 18 35 35 H 1.09002 * 109.46921 * 299.99566 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5969 1.9846 -0.8356 5 6 3.5405 1.4450 -0.1387 6 1 4.1570 1.8072 0.6707 7 6 4.1263 0.9847 -1.2989 8 7 5.4022 0.6659 -1.3096 9 14 3.1077 0.8138 -2.8553 10 1 3.0999 2.1065 -3.5862 11 1 3.6975 -0.2399 -3.7197 12 1 1.7160 0.4391 -2.4976 13 7 1.6637 2.0949 1.2613 14 6 0.6034 3.0883 1.0446 15 6 0.3056 3.7961 2.3411 16 6 0.9103 4.9048 2.7658 17 6 0.4694 5.3798 3.9903 18 6 -0.4941 4.6429 4.5639 19 16 -1.2492 4.9883 6.1180 20 6 -2.4423 3.6343 6.3018 21 16 -0.8875 3.2791 3.5251 22 1 -0.3634 0.5918 0.8401 23 1 -0.3633 -1.0235 0.0925 24 1 -0.3634 0.4316 -0.9326 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5137 -0.8899 27 1 5.8144 0.3423 -2.1259 28 1 1.3853 1.4138 1.9517 29 1 0.9325 3.8146 0.3014 30 1 -0.2968 2.5872 0.6890 31 1 1.6843 5.3981 2.1966 32 1 0.8721 6.2708 4.4490 33 1 -1.9139 2.6809 6.2955 34 1 -2.9775 3.7473 7.2446 35 1 -3.1528 3.6614 5.4756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309237577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = 12.403731 kcal Electronic energy + Delta-G solvation = -16186.246265 eV Core-core repulsion = 13629.297047 eV Total energy + Delta-G solvation = -2556.949218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.19752 -38.05762 -34.63316 -33.40369 -30.84088 -29.95599 -29.00075 -26.33464 -24.37296 -23.45747 -21.75346 -20.69245 -19.07086 -18.30928 -17.21295 -16.83107 -16.33956 -15.91960 -15.79995 -14.93793 -14.77981 -14.69647 -14.42603 -14.18050 -13.94236 -13.63263 -13.41110 -13.32446 -13.07215 -12.91035 -12.64151 -12.41034 -12.32889 -11.86709 -11.65586 -11.38469 -11.37576 -11.26936 -10.58119 -10.49985 -9.46760 -9.01044 -8.32106 -8.25644 -6.21430 -0.13028 0.32250 0.38388 0.93615 1.34968 1.38507 1.46730 1.55985 1.73453 2.37514 3.06352 3.57130 3.90380 4.18560 4.20166 4.23704 4.30648 4.37554 4.44992 4.47691 4.62265 4.68525 4.79749 4.81464 5.03406 5.07588 5.13166 5.20179 5.31153 5.49273 5.51307 5.75127 6.03827 6.64159 6.76760 6.84213 7.40728 8.91739 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035805 B = 0.004165 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.831187 B = 6720.623037 C = 7100.495312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.200 3.800 4 H 0.024 0.976 5 C -0.507 4.507 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.227 1.227 13 N -0.678 5.678 14 C 0.131 3.869 15 C -0.173 4.173 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.212 4.212 19 S -0.071 6.071 20 C -0.149 4.149 21 S 0.123 5.877 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.333 0.667 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.580 5.738 11.585 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.091 3.909 4 H 0.042 0.958 5 C -0.546 4.546 6 H 0.048 0.952 7 C -0.182 4.182 8 N -0.585 5.585 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.150 1.150 13 N -0.310 5.310 14 C 0.000 4.000 15 C -0.293 4.293 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.441 4.441 19 S 0.166 5.834 20 C -0.319 4.319 21 S 0.384 5.616 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.839 5.786 12.380 24.090 hybrid contribution 0.658 -0.510 -2.023 2.188 sum -19.181 5.276 10.357 22.428 Atomic orbital electron populations 1.21857 0.95022 1.02202 1.01374 1.22396 0.95701 0.99193 1.01247 1.19357 0.93458 0.90188 0.87940 0.95832 1.21272 0.91762 1.40593 1.00925 0.95227 1.25754 0.95855 0.94405 1.02216 1.70145 1.14285 1.45344 1.28755 0.86186 0.81458 0.77924 0.79437 1.20213 1.21576 1.15006 1.60455 1.40310 1.19108 1.11078 1.20479 0.93314 0.94661 0.91528 1.24441 1.02469 1.00946 1.01473 1.20209 1.01208 0.96950 0.96651 1.20049 0.97823 1.02134 0.95590 1.26280 1.08603 1.04325 1.04893 1.85174 1.44896 1.37621 1.15666 1.23862 1.00494 0.99096 1.08400 1.83850 1.39580 1.26351 1.11854 0.92571 0.91470 0.93014 0.92867 0.93336 0.92754 0.84864 0.90131 0.93478 0.83843 0.82825 0.89398 0.84469 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.45 71.98 0.68 -3.77 16 2 C -0.15 -5.82 4.56 30.59 0.14 -5.68 16 3 C 0.20 8.96 1.73 44.17 0.08 9.04 16 4 H 0.02 1.06 6.15 -2.39 -0.01 1.04 16 5 C -0.51 -29.03 9.25 25.60 0.24 -28.80 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.87 5.30 84.65 0.45 1.32 16 8 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 9 Si 0.93 42.96 25.86 68.60 1.77 44.74 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.23 -9.35 5.65 99.48 0.56 -8.78 16 13 N -0.68 -26.81 6.02 -499.47 -3.01 -29.81 16 14 C 0.13 4.25 5.57 85.56 0.48 4.73 16 15 C -0.17 -5.08 6.04 24.56 0.15 -4.93 16 16 C -0.12 -3.40 10.04 21.22 0.21 -3.19 16 17 C -0.12 -3.05 10.13 21.42 0.22 -2.83 16 18 C -0.21 -5.17 6.69 66.89 0.45 -4.72 16 19 S -0.07 -1.36 22.72 -56.49 -1.28 -2.64 16 20 C -0.15 -1.87 9.84 113.37 1.12 -0.76 16 21 S 0.12 2.98 22.30 -56.49 -1.26 1.72 16 22 H 0.06 1.55 5.97 -2.39 -0.01 1.53 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 2.15 8.06 -2.38 -0.02 2.13 16 26 H 0.05 2.06 5.17 -2.39 -0.01 2.05 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.33 12.34 7.70 -89.69 -0.69 11.65 16 29 H 0.08 2.72 8.06 -2.39 -0.02 2.71 16 30 H 0.05 1.38 6.61 -2.39 -0.02 1.36 16 31 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.14 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.06 310.24 0.97 -65.09 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.25 Total: 19.58 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 4.20 Total: -39.59 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.71 Total: -88.90 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.77 Total: 44.74 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.54 Total: -0.92 kcal Total: -66.06 0.97 -65.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.493 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds