Wall clock time and date at job start Mon Mar 30 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 H 1.09001 * 109.47148 * 185.16086 * 3 2 1 5 5 C 1.50702 * 109.47274 * 305.15851 * 3 2 1 6 6 H 1.07999 * 120.00109 * 119.99718 * 5 3 2 7 7 C 1.37883 * 120.00078 * 300.00559 * 5 3 2 8 8 N 1.31509 * 119.99610 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00113 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47103 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46819 * 119.99784 * 9 7 5 12 12 H 1.48492 * 109.47131 * 239.99951 * 9 7 5 13 13 N 1.46903 * 109.47284 * 65.16022 * 3 2 1 14 14 C 1.46892 * 111.00034 * 85.89972 * 13 3 2 15 15 C 1.50703 * 109.47407 * 174.81265 * 14 13 3 16 16 C 1.33243 * 125.11783 * 89.99583 * 15 14 13 17 17 C 1.38546 * 114.99158 * 180.02562 * 16 15 14 18 18 C 1.34176 * 114.70974 * 0.02562 * 17 16 15 19 19 S 1.76204 * 125.24552 * 179.97438 * 18 17 16 20 20 C 1.81399 * 103.00090 * 180.02562 * 19 18 17 21 21 S 1.75848 * 125.12676 * 270.00304 * 15 14 13 22 22 H 1.08997 * 109.47216 * 54.84674 * 1 2 3 23 23 H 1.09006 * 109.47254 * 174.85071 * 1 2 3 24 24 H 1.08999 * 109.46949 * 294.84851 * 1 2 3 25 25 H 1.08997 * 109.47073 * 240.00085 * 2 1 3 26 26 H 1.09001 * 109.47137 * 119.99493 * 2 1 3 27 27 H 0.97006 * 119.99995 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99905 * 321.94628 * 13 3 2 29 29 H 1.09008 * 109.47239 * 54.81293 * 14 13 3 30 30 H 1.08998 * 109.47109 * 294.81598 * 14 13 3 31 31 H 1.07994 * 122.50688 * 0.02681 * 16 15 14 32 32 H 1.08004 * 122.64586 * 179.73418 * 17 16 15 33 33 H 1.08997 * 109.47341 * 59.99756 * 20 19 18 34 34 H 1.09004 * 109.46901 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.47089 * 299.99521 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1889 -1.1616 6 1 0.8268 3.0628 -0.9840 7 6 1.6611 1.7559 -2.4512 8 7 2.4032 0.6920 -2.6675 9 14 0.9119 2.6806 -3.8910 10 1 0.1257 3.8338 -3.3836 11 1 1.9946 3.1732 -4.7802 12 1 0.0204 1.7705 -4.6538 13 7 1.6546 2.0982 1.2569 14 6 2.6431 1.8368 2.3115 15 6 2.2831 2.6256 3.5441 16 6 1.4973 2.1924 4.5291 17 6 1.3058 3.0930 5.5643 18 6 1.9425 4.2644 5.4136 19 16 1.8913 5.6040 6.5571 20 6 2.9420 6.8546 5.7679 21 16 2.8367 4.2565 3.8992 22 1 -0.3633 0.5917 -0.8402 23 1 -0.3634 -1.0236 -0.0922 24 1 -0.3633 0.4318 0.9325 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.5619 0.3876 -3.5748 28 1 0.7320 1.8104 1.5467 29 1 3.6323 2.1360 1.9647 30 1 2.6479 0.7731 2.5494 31 1 1.0436 1.2124 4.5211 32 1 0.6888 2.8715 6.4226 33 1 2.5258 7.1177 4.7955 34 1 2.9847 7.7432 6.3978 35 1 3.9472 6.4542 5.6366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309237580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:44 Heat of formation + Delta-G solvation = 9.767079 kcal Electronic energy + Delta-G solvation = -16148.114898 eV Core-core repulsion = 13591.051346 eV Total energy + Delta-G solvation = -2557.063551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.15773 -37.95039 -34.69985 -32.87663 -30.62422 -29.90312 -28.26889 -26.29396 -25.08299 -23.68159 -21.27587 -20.59205 -18.85958 -17.89945 -17.11076 -16.77317 -16.40780 -15.90796 -15.37354 -14.95290 -14.74177 -14.48236 -14.31838 -14.18006 -13.86742 -13.73630 -13.47684 -13.06179 -12.85577 -12.78342 -12.53339 -12.44110 -12.04625 -11.81768 -11.67145 -11.42321 -11.25188 -10.99289 -10.52975 -10.43697 -9.45478 -8.98494 -8.30854 -8.05352 -6.13870 -0.09368 0.36993 0.41316 1.03964 1.41254 1.44536 1.55348 1.56379 1.74198 2.45917 3.23202 3.67264 4.02526 4.18178 4.23785 4.25923 4.44469 4.55234 4.57901 4.65076 4.70774 4.77077 4.80192 5.07381 5.11090 5.24053 5.33580 5.42539 5.51910 5.71260 5.75030 5.82874 6.31002 6.64899 6.80228 6.97902 7.53752 8.99559 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.004145 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.451895 B = 6753.284950 C = 7314.207238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.498 4.498 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.682 5.682 14 C 0.131 3.869 15 C -0.167 4.167 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.218 4.218 19 S -0.067 6.067 20 C -0.150 4.150 21 S 0.118 5.882 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.028 0.972 27 H 0.259 0.741 28 H 0.336 0.664 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 6.739 17.433 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.537 4.537 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.314 5.314 14 C 0.000 4.000 15 C -0.288 4.288 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.447 4.447 19 S 0.170 5.830 20 C -0.320 4.320 21 S 0.379 5.621 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.415 8.496 17.420 19.386 hybrid contribution -0.526 -1.871 -1.498 2.454 sum -0.111 6.624 15.922 17.246 Atomic orbital electron populations 1.21484 0.95940 0.99628 1.00847 1.21954 0.96515 0.99758 0.99598 1.19002 0.93784 0.89603 0.86346 0.98240 1.21281 1.30309 1.11290 0.90818 0.93151 1.25556 0.95937 0.95873 1.00927 1.70009 1.39943 1.25071 1.21004 0.85630 0.78221 0.78833 0.79693 1.19523 1.21057 1.20691 1.60714 1.04572 1.63201 1.02915 1.20269 0.96274 0.95856 0.87634 1.24421 1.05663 0.97951 1.00763 1.20242 1.00131 1.02124 0.93323 1.20049 1.02423 0.91616 1.01184 1.26343 1.10470 1.04238 1.03610 1.85032 1.63847 1.07722 1.26405 1.23847 1.01930 1.00788 1.05402 1.84232 1.49680 1.14459 1.13723 0.93687 0.93880 0.93238 0.91913 0.95288 0.93189 0.84551 0.91959 0.93299 0.82689 0.82363 0.89690 0.84403 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.29 16 2 C -0.14 -6.33 5.51 30.59 0.17 -6.16 16 3 C 0.22 10.85 2.33 44.17 0.10 10.95 16 4 H 0.00 -0.02 7.70 -2.39 -0.02 -0.04 16 5 C -0.50 -26.98 7.25 25.60 0.19 -26.79 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.02 0.83 5.28 84.66 0.45 1.28 16 8 N -0.92 -52.07 11.38 21.45 0.24 -51.83 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 N -0.68 -28.35 6.19 -499.46 -3.09 -31.45 16 14 C 0.13 4.62 5.99 85.56 0.51 5.13 16 15 C -0.17 -5.15 6.06 24.56 0.15 -5.00 16 16 C -0.13 -3.36 10.04 21.22 0.21 -3.15 16 17 C -0.12 -2.85 10.13 21.42 0.22 -2.63 16 18 C -0.22 -5.54 6.69 66.89 0.45 -5.10 16 19 S -0.07 -1.36 22.72 -56.49 -1.28 -2.65 16 20 C -0.15 -2.26 9.84 113.37 1.12 -1.14 16 21 S 0.12 3.35 22.30 -56.49 -1.26 2.09 16 22 H 0.04 2.05 6.85 -2.39 -0.02 2.03 16 23 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.05 1.78 6.63 -2.39 -0.02 1.76 16 25 H 0.06 3.28 6.23 -2.39 -0.01 3.26 16 26 H 0.03 1.19 7.50 -2.39 -0.02 1.17 16 27 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 28 H 0.34 13.19 6.69 -89.69 -0.60 12.59 16 29 H 0.06 2.33 7.93 -2.38 -0.02 2.31 16 30 H 0.05 1.64 7.54 -2.39 -0.02 1.62 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -59.16 313.86 1.35 -57.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.48 Total: 17.17 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.24 Total: -36.89 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.85 Total: -83.28 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.54 Total: -0.56 kcal Total: -59.16 1.35 -57.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.574 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds