Wall clock time and date at job start Mon Mar 30 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 S 1.65602 * 119.99580 * 2 1 4 4 O 1.42100 * 106.40442 * 311.45622 * 3 2 1 5 5 O 1.42107 * 106.39710 * 178.54050 * 3 2 1 6 6 C 1.76196 * 107.21973 * 65.00313 * 3 2 1 7 7 C 1.38874 * 120.33833 * 89.99629 * 6 3 2 8 8 C 1.38305 * 118.50806 * 180.02562 * 7 6 3 9 9 C 1.39143 * 119.09428 * 0.02562 * 8 7 6 10 10 N 1.38992 * 119.70430 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00445 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47509 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00108 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99571 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47352 * 60.00449 * 16 14 12 18 18 H 1.48505 * 109.46990 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47328 * 299.99761 * 16 14 12 20 20 N 1.32396 * 120.58609 * 0.02562 * 9 8 7 21 21 C 1.31970 * 121.62524 * 359.97438 * 20 9 8 22 22 H 1.09001 * 109.47043 * 300.00000 * 1 2 3 23 23 H 1.09002 * 109.47066 * 60.00207 * 1 2 3 24 24 H 1.08996 * 109.46954 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99972 * 180.02562 * 2 1 3 26 26 H 1.08001 * 120.74845 * 0.02562 * 7 6 3 27 27 H 1.07994 * 120.45256 * 179.72768 * 8 7 6 28 28 H 0.97002 * 119.99871 * 180.02562 * 10 9 8 29 29 H 1.08999 * 109.47011 * 300.00902 * 11 10 9 30 30 H 1.09010 * 109.46557 * 60.00012 * 11 10 9 31 31 H 0.97006 * 119.99602 * 179.97438 * 15 14 12 32 32 H 1.08004 * 119.56936 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7120 2.2330 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.7372 2.0198 2.6391 8 6 2.4235 2.6727 3.8173 9 6 1.3236 3.5244 3.8467 10 7 0.9966 4.1867 5.0242 11 6 1.8083 3.9860 6.2272 12 6 1.2457 4.8108 7.3561 13 1 0.3709 5.4228 7.1938 14 6 1.8480 4.7839 8.5961 15 7 2.9137 4.0390 8.7935 16 14 1.1503 5.8057 9.9955 17 1 -0.2478 5.3847 10.2666 18 1 1.9738 5.6034 11.2146 19 1 1.1705 7.2418 9.6179 20 7 0.5852 3.7088 2.7634 21 6 0.8610 3.0991 1.6259 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.9500 -0.8400 -0.0004 26 1 3.5847 1.3524 2.5864 27 1 3.0213 2.5199 4.7036 28 1 0.2305 4.7811 5.0496 29 1 1.7924 2.9321 6.5046 30 1 2.8349 4.2939 6.0283 31 1 3.3376 4.0204 9.6658 32 1 0.2364 3.2741 0.7623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309581112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:45 Heat of formation + Delta-G solvation = -66.281620 kcal Electronic energy + Delta-G solvation = -18131.344163 eV Core-core repulsion = 15024.689678 eV Total energy + Delta-G solvation = -3106.654485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22900 -38.26422 -37.22184 -36.87905 -35.79692 -34.76992 -33.55510 -31.35331 -28.77306 -26.76306 -25.52699 -24.44632 -23.30371 -20.53626 -19.54492 -18.83198 -18.50598 -17.85226 -17.75426 -17.01814 -16.61724 -15.78406 -15.60545 -15.55548 -15.10761 -14.68376 -14.36943 -14.23998 -14.13098 -13.98075 -13.71025 -13.16835 -13.06487 -12.92349 -12.80202 -12.47228 -12.33313 -12.10111 -11.69012 -11.55948 -10.98089 -10.68406 -10.65676 -10.38474 -8.92284 -8.36367 -6.50585 -0.51545 -0.07700 0.28310 1.41239 1.42957 1.51292 2.11193 2.20897 2.41735 2.61288 2.89154 3.00206 3.38288 3.54341 3.82473 4.03732 4.24551 4.31776 4.71588 4.73735 4.74897 4.83505 4.96524 4.98623 5.06438 5.14860 5.36200 5.57094 5.76255 5.93699 6.18893 6.53588 6.69450 7.02672 7.22888 8.74645 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045948 B = 0.003652 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.238473 B = 7665.590798 C = 7860.659244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.110 6.110 3 S 2.741 3.259 4 O -0.983 6.983 5 O -0.990 6.990 6 C -0.808 4.808 7 C 0.063 3.937 8 C -0.275 4.275 9 C 0.429 3.571 10 N -0.692 5.692 11 C 0.267 3.733 12 C -0.564 4.564 13 H 0.071 0.929 14 C 0.016 3.984 15 N -0.921 5.921 16 Si 0.976 3.024 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.268 1.268 20 N -0.578 5.578 21 C 0.245 3.755 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.429 0.571 26 H 0.166 0.834 27 H 0.132 0.868 28 H 0.404 0.596 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.271 0.729 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -9.081 -15.120 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.873 5.873 3 S 2.828 3.172 4 O -0.973 6.973 5 O -0.980 6.980 6 C -0.901 4.901 7 C 0.037 3.963 8 C -0.301 4.301 9 C 0.190 3.810 10 N -0.315 5.315 11 C 0.145 3.855 12 C -0.602 4.602 13 H 0.090 0.910 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.800 3.200 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.193 1.193 20 N -0.297 5.297 21 C 0.081 3.919 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.265 0.735 26 H 0.184 0.816 27 H 0.150 0.850 28 H 0.239 0.761 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.595 -8.099 -15.271 17.886 hybrid contribution 0.270 -0.036 1.785 1.805 sum -4.325 -8.135 -13.486 16.333 Atomic orbital electron populations 1.21742 0.77279 1.06031 1.02301 1.55042 1.16887 1.23716 1.91681 1.00364 0.71840 0.72506 0.72460 1.93532 1.79169 1.69704 1.54899 1.93532 1.32979 1.84017 1.87522 1.31381 1.12023 1.23514 1.23133 1.21174 0.94431 0.91481 0.89178 1.21613 1.01782 1.05357 1.01360 1.19071 0.88577 0.86774 0.86549 1.45430 1.32387 1.45955 1.07748 1.18891 0.90036 0.96097 0.80473 1.21477 1.14521 1.28523 0.95664 0.91047 1.25826 0.94870 0.96450 1.01313 1.70037 1.20938 1.39966 1.24963 0.85326 0.78497 0.78841 0.77327 1.19094 1.20570 1.19288 1.67359 1.32746 1.29789 0.99825 1.22621 0.90501 0.84814 0.93948 0.92241 0.90896 0.87363 0.73484 0.81614 0.84967 0.76067 0.97163 0.97459 0.91973 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 11.14 127.77 1.42 2.22 16 2 N -1.11 -15.70 6.19 -206.53 -1.28 -16.98 16 3 S 2.74 60.84 5.75 -56.49 -0.32 60.51 16 4 O -0.98 -26.04 17.02 -128.00 -2.18 -28.22 16 5 O -0.99 -27.20 17.35 -128.00 -2.22 -29.42 16 6 C -0.81 -21.52 5.96 22.37 0.13 -21.39 16 7 C 0.06 1.85 9.64 22.44 0.22 2.07 16 8 C -0.27 -9.91 9.33 22.50 0.21 -9.70 16 9 C 0.43 16.67 7.65 133.07 1.02 17.69 16 10 N -0.69 -29.23 5.72 -348.79 -2.00 -31.22 16 11 C 0.27 13.18 4.64 85.63 0.40 13.58 16 12 C -0.56 -29.48 9.28 25.60 0.24 -29.25 16 13 H 0.07 3.55 7.60 -2.91 -0.02 3.53 16 14 C 0.02 0.86 5.46 84.65 0.46 1.32 16 15 N -0.92 -51.35 13.29 21.45 0.28 -51.07 16 16 Si 0.98 41.05 29.54 68.60 2.03 43.08 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 N -0.58 -20.30 10.39 -193.26 -2.01 -22.31 16 21 C 0.25 6.98 10.68 84.62 0.90 7.88 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 24 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.43 4.18 8.96 -96.74 -0.87 3.31 16 26 H 0.17 3.96 7.70 -2.91 -0.02 3.94 16 27 H 0.13 5.01 6.71 -2.91 -0.02 4.99 16 28 H 0.40 16.23 8.44 -92.71 -0.78 15.45 16 29 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 30 H 0.01 0.40 7.93 -2.38 -0.02 0.38 16 31 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 32 H 0.19 4.18 7.62 -2.91 -0.02 4.16 16 Total: -1.00 -67.41 295.93 -3.18 -70.59 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.48 Total: 20.62 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.00 Total: -15.58 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -5.00 Total: -121.58 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -4.40 Total: -57.65 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 60.84 SS G_CDS: -0.32 Total: 60.51 kcal Total: -67.41 -3.18 -70.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309581112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.309 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds