Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48496 * 109.47016 * 269.99945 * 3 2 1 5 5 H 1.48502 * 109.46733 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47155 * 149.99464 * 3 2 1 7 7 C 1.37879 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47033 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99803 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46827 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.38250 * 119.98297 * 265.25498 * 14 13 12 16 16 C 1.38180 * 120.03849 * 180.29853 * 15 14 13 17 17 C 1.38490 * 120.00167 * 359.72524 * 16 15 14 18 18 F 1.35100 * 120.02139 * 180.02562 * 17 16 15 19 19 C 1.38416 * 119.96045 * 0.02562 * 17 16 15 20 20 C 1.38341 * 119.97819 * 85.00185 * 14 13 12 21 21 Cl 1.73599 * 120.00413 * 359.97438 * 20 14 13 22 22 H 0.96996 * 120.00599 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47197 * 59.99385 * 9 7 2 24 24 H 1.09004 * 109.46797 * 299.99173 * 9 7 2 25 25 H 1.08999 * 109.47615 * 59.99117 * 10 9 7 26 26 H 1.09003 * 109.47111 * 299.99388 * 10 9 7 27 27 H 1.00892 * 111.00147 * 56.04350 * 11 10 9 28 28 H 1.08996 * 109.47444 * 59.99961 * 12 11 10 29 29 H 1.08998 * 109.47245 * 299.99404 * 12 11 10 30 30 H 1.09005 * 109.47281 * 60.00258 * 13 12 11 31 31 H 1.09004 * 109.47486 * 300.00068 * 13 12 11 32 32 H 1.07999 * 119.98219 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.99944 * 179.70122 * 16 15 14 34 34 H 1.08002 * 120.01901 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0024 12 6 2.4356 -6.0758 0.0031 13 6 1.6356 -7.3799 0.0044 14 6 2.5841 -8.5511 0.0044 15 6 2.9411 -9.1510 -1.1889 16 6 3.8058 -10.2288 -1.1897 17 6 4.3199 -10.7051 0.0048 18 9 5.1657 -11.7585 0.0044 19 6 3.9665 -10.1012 1.1991 20 6 3.1011 -9.0219 1.1981 21 17 2.6578 -8.2633 2.6953 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8715 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 0.8749 -4.9849 -0.7791 28 1 3.0635 -6.0343 0.8930 29 1 3.0636 -6.0353 -0.8869 30 1 1.0074 -7.4217 -0.8855 31 1 1.0078 -7.4203 0.8946 32 1 2.5405 -8.7799 -2.1207 33 1 4.0805 -10.7000 -2.1219 34 1 4.3671 -10.4716 2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309599572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -46.905190 kcal Electronic energy + Delta-G solvation = -17309.586885 eV Core-core repulsion = 14181.808958 eV Total energy + Delta-G solvation = -3127.777928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.25686 -39.71793 -36.66152 -36.32312 -33.60779 -32.35543 -31.30137 -29.66652 -27.22002 -24.22407 -23.48555 -22.58677 -21.29540 -20.42294 -18.14349 -17.07365 -16.36016 -15.99180 -15.90718 -15.46885 -14.96227 -14.52825 -14.18953 -14.14213 -13.92050 -13.54356 -13.08218 -12.96090 -12.27984 -11.94683 -11.77851 -11.73700 -11.46961 -11.20312 -11.01875 -10.92942 -10.83233 -10.52719 -9.97688 -9.42520 -9.31975 -9.15235 -8.81479 -8.34944 -7.83784 -5.99428 -4.01976 0.64456 0.72332 1.82347 3.06846 3.32270 3.38514 3.42081 3.87971 4.28656 4.36029 4.47712 4.52085 4.78942 4.97566 5.12956 5.20179 5.36437 5.37747 5.51731 5.57862 5.69770 5.74075 5.86096 6.14414 6.19425 6.33169 6.39072 6.43304 6.98035 7.46059 7.72617 7.82684 7.95644 8.08634 8.43976 9.05343 9.61795 11.12022 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.002991 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.174203 B = 9358.236155 C = 9584.525115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.066 3.934 13 C -0.085 4.085 14 C -0.074 4.074 15 C -0.077 4.077 16 C -0.147 4.147 17 C 0.102 3.898 18 F -0.136 7.136 19 C -0.146 4.146 20 C -0.008 4.008 21 Cl -0.044 7.044 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.015 0.985 27 H 0.336 0.664 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.249 -22.904 -0.715 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.064 4.064 13 C -0.123 4.123 14 C -0.075 4.075 15 C -0.095 4.095 16 C -0.166 4.166 17 C 0.083 3.917 18 F -0.114 7.114 19 C -0.165 4.165 20 C -0.035 4.035 21 Cl -0.015 7.015 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.153 0.847 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.012 -22.749 0.122 23.530 hybrid contribution 0.990 0.777 -0.788 1.485 sum 7.002 -21.972 -0.667 23.071 Atomic orbital electron populations 1.69969 1.06028 1.26598 1.50677 1.25004 0.94844 0.99217 0.95306 0.86588 0.79863 0.83460 0.78053 1.20711 1.21181 1.19867 1.21184 0.92996 0.91040 1.50851 0.92767 1.19067 0.94012 0.90400 0.97730 1.22158 0.96981 0.88363 0.98670 1.60575 1.19795 1.02064 1.49659 1.21853 0.94544 0.89519 1.00492 1.20715 0.96367 0.90715 1.04509 1.19936 0.98470 0.97897 0.91225 1.20944 0.96297 0.94371 0.97864 1.21245 0.99435 0.98568 0.97369 1.17446 0.92950 0.87282 0.94066 1.91520 1.68360 1.54219 1.97337 1.20968 1.00252 0.96924 0.98389 1.20587 0.98969 0.95700 0.88261 1.98417 1.91402 1.80578 1.31066 0.92985 0.96805 0.95608 0.92342 0.96675 0.84732 0.91083 0.95825 0.90423 0.89036 0.83913 0.84136 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 N -0.69 -12.04 6.50 -113.78 -0.74 -12.78 16 12 C 0.07 0.92 5.67 -3.82 -0.02 0.90 16 13 C -0.09 -0.96 5.11 -27.88 -0.14 -1.11 16 14 C -0.07 -0.76 5.14 -104.58 -0.54 -1.30 16 15 C -0.08 -0.66 9.68 -39.60 -0.38 -1.04 16 16 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 17 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 18 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 19 C -0.15 -1.40 9.81 -39.48 -0.39 -1.79 16 20 C -0.01 -0.09 6.31 -39.51 -0.25 -0.34 16 21 Cl -0.04 -0.50 27.15 -51.86 -1.41 -1.90 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.34 5.50 8.73 -39.30 -0.34 5.16 16 28 H 0.07 1.06 7.90 -51.93 -0.41 0.65 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.09 1.11 7.12 -51.93 -0.37 0.74 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -30.35 312.27 -9.14 -39.49 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.46 Total: -1.30 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.98 Total: -17.35 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.00 Total: -39.05 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.41 Total: -1.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.35 -9.14 -39.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309599572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.415 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds