Wall clock time and date at job start Mon Mar 30 2020 00:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48496 * 109.47016 * 269.99945 * 3 2 1 5 5 H 1.48502 * 109.46733 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47155 * 149.99464 * 3 2 1 7 7 C 1.37879 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47033 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99803 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46827 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.38250 * 119.98297 * 265.25498 * 14 13 12 16 16 C 1.38180 * 120.03849 * 180.29853 * 15 14 13 17 17 C 1.38490 * 120.00167 * 359.72524 * 16 15 14 18 18 F 1.35100 * 120.02139 * 180.02562 * 17 16 15 19 19 C 1.38416 * 119.96045 * 0.02562 * 17 16 15 20 20 C 1.38341 * 119.97819 * 85.00185 * 14 13 12 21 21 Cl 1.73599 * 120.00413 * 359.97438 * 20 14 13 22 22 H 0.96996 * 120.00599 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47197 * 59.99385 * 9 7 2 24 24 H 1.09004 * 109.46797 * 299.99173 * 9 7 2 25 25 H 1.08999 * 109.47615 * 59.99117 * 10 9 7 26 26 H 1.09003 * 109.47111 * 299.99388 * 10 9 7 27 27 H 1.00892 * 111.00147 * 56.04350 * 11 10 9 28 28 H 1.08996 * 109.47444 * 59.99961 * 12 11 10 29 29 H 1.08998 * 109.47245 * 299.99404 * 12 11 10 30 30 H 1.09005 * 109.47281 * 60.00258 * 13 12 11 31 31 H 1.09004 * 109.47486 * 300.00068 * 13 12 11 32 32 H 1.07999 * 119.98219 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.99944 * 179.70122 * 16 15 14 34 34 H 1.08002 * 120.01901 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0024 12 6 2.4356 -6.0758 0.0031 13 6 1.6356 -7.3799 0.0044 14 6 2.5841 -8.5511 0.0044 15 6 2.9411 -9.1510 -1.1889 16 6 3.8058 -10.2288 -1.1897 17 6 4.3199 -10.7051 0.0048 18 9 5.1657 -11.7585 0.0044 19 6 3.9665 -10.1012 1.1991 20 6 3.1011 -9.0219 1.1981 21 17 2.6578 -8.2633 2.6953 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8715 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 0.8749 -4.9849 -0.7791 28 1 3.0635 -6.0343 0.8930 29 1 3.0636 -6.0353 -0.8869 30 1 1.0074 -7.4217 -0.8855 31 1 1.0078 -7.4203 0.8946 32 1 2.5405 -8.7799 -2.1207 33 1 4.0805 -10.7000 -2.1219 34 1 4.3671 -10.4716 2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309599572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:27 Heat of formation + Delta-G solvation = -64.284839 kcal Electronic energy + Delta-G solvation = -17310.340524 eV Core-core repulsion = 14181.808958 eV Total energy + Delta-G solvation = -3128.531566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.99786 -40.46991 -37.72755 -37.47317 -35.34341 -33.83118 -32.01235 -31.26188 -28.52624 -25.97858 -24.18887 -23.74813 -22.57033 -21.92750 -18.87251 -18.50457 -17.84967 -16.89581 -16.76903 -16.68229 -16.45773 -15.78144 -15.27659 -15.08498 -14.97224 -14.72465 -14.33861 -14.15439 -14.02004 -13.16442 -13.06135 -12.87127 -12.76823 -12.53906 -12.38678 -12.27241 -12.05804 -11.88049 -11.72040 -11.39824 -11.24006 -10.55512 -10.04421 -9.61050 -9.26992 -8.19741 -6.31094 -0.09084 0.01774 1.03156 1.40883 1.42479 1.53640 2.34496 2.41399 3.13672 3.14571 3.31811 3.63025 3.86275 3.91998 4.05507 4.22569 4.32792 4.41965 4.58457 4.61280 4.68215 4.81934 4.86565 4.98365 5.07294 5.08404 5.16427 5.37117 5.45923 5.67823 5.69734 5.79533 6.14493 6.28288 6.59301 6.86426 7.38146 8.92376 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034510 B = 0.002991 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.174203 B = 9358.236155 C = 9584.525115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.084 3.916 11 N -0.697 5.697 12 C 0.070 3.930 13 C -0.076 4.076 14 C -0.084 4.084 15 C -0.071 4.071 16 C -0.140 4.140 17 C 0.094 3.906 18 F -0.140 7.140 19 C -0.151 4.151 20 C -0.020 4.020 21 Cl -0.059 7.059 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.006 1.006 25 H 0.053 0.947 26 H 0.021 0.979 27 H 0.342 0.658 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -23.424 -1.865 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.044 4.044 11 N -0.328 5.328 12 C -0.060 4.060 13 C -0.114 4.114 14 C -0.085 4.085 15 C -0.089 4.089 16 C -0.159 4.159 17 C 0.074 3.926 18 F -0.118 7.118 19 C -0.170 4.170 20 C -0.046 4.046 21 Cl -0.030 7.030 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.160 0.840 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.160 -23.294 -1.030 24.392 hybrid contribution 0.625 0.852 -0.447 1.147 sum 7.785 -22.443 -1.477 23.800 Atomic orbital electron populations 1.70101 1.07786 1.27814 1.51431 1.25970 0.95775 1.03344 0.94641 0.85433 0.78618 0.78353 0.78551 1.19603 1.20735 1.18825 1.21628 0.93529 0.92352 1.50910 0.92239 1.18916 0.94293 0.92176 0.95163 1.21757 0.95590 0.88475 0.98623 1.60449 1.20401 1.01639 1.50295 1.21859 0.94301 0.89391 1.00400 1.20569 0.96270 0.89612 1.04909 1.19922 0.98796 0.97971 0.91858 1.21215 0.95724 0.93931 0.98051 1.21537 0.98404 0.98039 0.97896 1.17621 0.93104 0.87302 0.94531 1.91513 1.68529 1.54416 1.97372 1.21071 1.00092 0.96720 0.99115 1.20681 0.99774 0.96294 0.87899 1.98410 1.91587 1.80893 1.32072 0.92720 0.98713 0.98796 0.92874 0.96128 0.83963 0.92135 0.94812 0.88608 0.90152 0.81472 0.81623 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.08 3.56 5.62 86.30 0.49 4.05 16 11 N -0.70 -23.96 6.50 -513.89 -3.34 -27.30 16 12 C 0.07 1.87 5.67 86.30 0.49 2.36 16 13 C -0.08 -1.60 5.11 29.85 0.15 -1.45 16 14 C -0.08 -1.58 5.14 -19.84 -0.10 -1.68 16 15 C -0.07 -1.01 9.68 22.26 0.22 -0.79 16 16 C -0.14 -1.91 10.03 22.32 0.22 -1.69 16 17 C 0.09 1.61 7.30 22.37 0.16 1.77 16 18 F -0.14 -2.55 17.27 44.97 0.78 -1.77 16 19 C -0.15 -2.73 9.81 22.34 0.22 -2.51 16 20 C -0.02 -0.40 6.31 22.32 0.14 -0.25 16 21 Cl -0.06 -1.32 27.15 -2.72 -0.07 -1.40 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 24 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.34 10.99 8.73 -89.70 -0.78 10.21 16 28 H 0.06 1.76 7.90 -2.39 -0.02 1.74 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.66 8.05 -2.38 -0.02 1.64 16 31 H 0.08 1.89 7.12 -2.39 -0.02 1.87 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -65.17 312.27 2.83 -62.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.32 Total: 7.44 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 2.84 Total: -28.96 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.06 Total: -84.04 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.40 kcal Total: -65.17 2.83 -62.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309599572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.944 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds