Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46831 * 2 1 4 4 C 1.50695 * 109.47465 * 240.00076 * 2 1 3 5 5 H 1.07999 * 120.00278 * 275.00204 * 4 2 1 6 6 C 1.37881 * 119.99765 * 94.99165 * 4 2 1 7 7 N 1.31515 * 119.99783 * 184.91451 * 6 4 2 8 8 Si 1.86795 * 120.00201 * 4.91900 * 6 4 2 9 9 H 1.48504 * 109.46961 * 84.82909 * 8 6 4 10 10 H 1.48496 * 109.47488 * 204.82829 * 8 6 4 11 11 H 1.48496 * 109.47272 * 324.83102 * 8 6 4 12 12 N 1.46901 * 109.47186 * 119.99583 * 2 1 3 13 13 C 1.46896 * 111.00376 * 275.00389 * 12 2 1 14 14 C 1.53008 * 109.47021 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.38460 * 120.01921 * 269.97600 * 15 14 13 17 17 F 1.35102 * 120.01796 * 0.04726 * 16 15 14 18 18 C 1.38443 * 119.96512 * 180.02562 * 16 15 14 19 19 C 1.38232 * 119.99640 * 0.02562 * 18 16 15 20 20 C 1.38197 * 120.04034 * 359.67737 * 19 18 16 21 21 C 1.38293 * 120.02041 * 90.00011 * 15 14 13 22 22 Cl 1.73594 * 119.99853 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47290 * 295.04231 * 1 2 3 24 24 H 1.09000 * 109.47098 * 55.04424 * 1 2 3 25 25 H 1.09003 * 109.46878 * 175.04411 * 1 2 3 26 26 H 0.97001 * 120.00110 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99671 * 38.96084 * 12 2 1 28 28 H 1.08989 * 109.47213 * 60.00181 * 13 12 2 29 29 H 1.08993 * 109.47100 * 299.99579 * 13 12 2 30 30 H 1.08996 * 109.46722 * 59.99757 * 14 13 12 31 31 H 1.08998 * 109.47252 * 299.99874 * 14 13 12 32 32 H 1.07997 * 120.00383 * 180.02562 * 18 16 15 33 33 H 1.08003 * 119.97527 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.98684 * 180.29516 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7854 -1.2290 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6130 -3.4622 8 14 2.3132 1.8792 -2.3174 9 1 3.5988 2.3951 -1.7822 10 1 2.1055 2.3992 -3.6927 11 1 1.1983 2.3275 -1.4450 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 6 2.6600 0.4057 4.7515 16 6 3.8153 1.1272 5.0004 17 9 4.8856 0.9909 4.1874 18 6 3.8728 1.9887 6.0826 19 6 2.7774 2.1278 6.9142 20 6 1.6222 1.4124 6.6622 21 6 1.5649 0.5465 5.5842 22 17 0.1160 -0.3575 5.2730 23 1 -0.3634 0.4350 0.9310 24 1 -0.3633 0.5888 -0.8423 25 1 -0.3633 -1.0239 -0.0888 26 1 2.9369 -0.1047 -4.2554 27 1 1.4496 -1.4978 1.4100 28 1 1.0871 0.6163 2.5526 29 1 2.7588 1.0462 2.1183 30 1 3.5917 -0.9262 3.3682 31 1 1.9203 -1.3567 3.8031 32 1 4.7734 2.5521 6.2771 33 1 2.8228 2.7997 7.7586 34 1 0.7653 1.5253 7.3098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309768269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = -35.697177 kcal Electronic energy + Delta-G solvation = -18236.597630 eV Core-core repulsion = 15109.305718 eV Total energy + Delta-G solvation = -3127.291912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.99746 -39.50773 -36.63658 -36.49051 -33.71617 -32.01225 -30.65547 -29.77660 -26.86371 -25.17355 -23.11479 -22.93644 -21.11099 -19.97291 -17.88800 -16.99218 -16.90391 -16.08740 -15.73814 -14.96195 -14.72612 -14.60069 -14.07018 -13.76655 -13.47331 -13.21375 -13.08228 -12.41486 -12.35713 -11.99034 -11.81940 -11.65720 -11.51319 -11.46663 -11.01014 -10.95143 -10.67396 -10.58271 -10.05423 -9.71693 -9.15431 -8.96878 -8.88573 -8.47683 -7.34496 -6.01616 -3.98319 0.74388 0.83585 1.86968 3.17535 3.31765 3.39147 3.39830 4.04961 4.38465 4.45864 4.56127 4.59454 4.91419 5.08419 5.25354 5.34781 5.44608 5.59357 5.69013 5.78300 5.87756 5.91267 5.94412 6.24346 6.34065 6.35835 6.45451 6.51328 6.64578 6.85309 7.16902 7.74399 7.99280 8.40984 8.71066 9.06463 9.61525 11.12150 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.005000 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.526172 B = 5598.651877 C = 6218.068831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.035 0.965 4 C -0.490 4.490 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.066 3.934 14 C -0.086 4.086 15 C -0.099 4.099 16 C 0.116 3.884 17 F -0.125 7.125 18 C -0.150 4.150 19 C -0.088 4.088 20 C -0.122 4.122 21 C -0.010 4.010 22 Cl -0.052 7.052 23 H 0.020 0.980 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.328 0.672 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 5.341 23.022 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.302 5.302 13 C -0.064 4.064 14 C -0.124 4.124 15 C -0.101 4.101 16 C 0.096 3.904 17 F -0.103 7.103 18 C -0.169 4.169 19 C -0.107 4.107 20 C -0.141 4.141 21 C -0.037 4.037 22 Cl -0.023 7.023 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.203 5.364 22.578 23.237 hybrid contribution -0.871 1.107 -0.038 1.409 sum -2.073 6.472 22.540 23.542 Atomic orbital electron populations 1.22636 1.00969 1.00761 0.98612 1.19654 0.89404 0.94666 0.89115 0.94671 1.20866 1.42543 0.95712 0.93740 0.90548 1.24966 0.94805 0.97948 0.95415 1.69892 1.46831 1.35579 1.01690 0.86924 0.78945 0.86960 0.76981 1.20147 1.21521 1.19378 1.60907 1.57957 1.08780 1.02600 1.21846 0.98412 0.95989 0.90116 1.20684 1.04335 0.96479 0.90855 1.19900 0.91807 0.99896 0.98524 1.17383 0.84089 0.98172 0.90738 1.91563 1.53047 1.94442 1.71283 1.21260 1.00883 0.99779 0.94961 1.20903 0.91704 0.98875 0.99191 1.21090 0.99416 0.96544 0.97001 1.20603 0.88621 0.97462 0.97009 1.98389 1.35172 1.73337 1.95434 0.96111 0.93272 0.93227 0.92716 0.85524 0.95994 0.91828 0.89233 0.89988 0.84172 0.84214 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 9.16 37.16 0.34 -3.33 16 2 C 0.18 4.32 2.23 -68.87 -0.15 4.17 16 3 H 0.04 0.88 4.95 -51.93 -0.26 0.62 16 4 C -0.49 -14.01 9.19 -34.44 -0.32 -14.32 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 8 Si 0.87 22.04 26.99 -169.99 -4.59 17.46 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.48 6.82 56.52 0.39 -6.10 16 12 N -0.67 -14.12 6.23 -107.96 -0.67 -14.79 16 13 C 0.07 1.18 5.47 -3.82 -0.02 1.16 16 14 C -0.09 -1.27 5.03 -27.88 -0.14 -1.41 16 15 C -0.10 -1.30 5.14 -104.52 -0.54 -1.84 16 16 C 0.12 1.46 7.24 -39.42 -0.29 1.18 16 17 F -0.13 -1.81 16.48 2.25 0.04 -1.77 16 18 C -0.15 -1.44 10.03 -39.51 -0.40 -1.83 16 19 C -0.09 -0.71 10.04 -39.60 -0.40 -1.10 16 20 C -0.12 -1.10 9.83 -39.54 -0.39 -1.49 16 21 C -0.01 -0.12 6.31 -39.51 -0.25 -0.37 16 22 Cl -0.05 -0.61 27.29 -51.86 -1.42 -2.02 16 23 H 0.02 0.39 7.35 -51.93 -0.38 0.01 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.33 6.38 8.48 -39.29 -0.33 6.05 16 28 H 0.02 0.38 7.36 -51.94 -0.38 0.00 16 29 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.09 1.39 7.64 -51.93 -0.40 0.99 16 31 H 0.08 1.14 6.90 -51.93 -0.36 0.78 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -31.05 304.71 -8.13 -39.19 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.22 Total: 1.77 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.64 Total: -17.23 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.10 Total: -41.97 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.59 Total: 17.46 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.05 -8.13 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309768269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.489 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds