Wall clock time and date at job start Mon Mar 30 2020 01:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46831 * 2 1 4 4 C 1.50695 * 109.47465 * 240.00076 * 2 1 3 5 5 H 1.07999 * 120.00278 * 275.00204 * 4 2 1 6 6 C 1.37881 * 119.99765 * 94.99165 * 4 2 1 7 7 N 1.31515 * 119.99783 * 184.91451 * 6 4 2 8 8 Si 1.86795 * 120.00201 * 4.91900 * 6 4 2 9 9 H 1.48504 * 109.46961 * 84.82909 * 8 6 4 10 10 H 1.48496 * 109.47488 * 204.82829 * 8 6 4 11 11 H 1.48496 * 109.47272 * 324.83102 * 8 6 4 12 12 N 1.46901 * 109.47186 * 119.99583 * 2 1 3 13 13 C 1.46896 * 111.00376 * 275.00389 * 12 2 1 14 14 C 1.53008 * 109.47021 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47026 * 180.02562 * 14 13 12 16 16 C 1.38460 * 120.01921 * 269.97600 * 15 14 13 17 17 F 1.35102 * 120.01796 * 0.04726 * 16 15 14 18 18 C 1.38443 * 119.96512 * 180.02562 * 16 15 14 19 19 C 1.38232 * 119.99640 * 0.02562 * 18 16 15 20 20 C 1.38197 * 120.04034 * 359.67737 * 19 18 16 21 21 C 1.38293 * 120.02041 * 90.00011 * 15 14 13 22 22 Cl 1.73594 * 119.99853 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47290 * 295.04231 * 1 2 3 24 24 H 1.09000 * 109.47098 * 55.04424 * 1 2 3 25 25 H 1.09003 * 109.46878 * 175.04411 * 1 2 3 26 26 H 0.97001 * 120.00110 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99671 * 38.96084 * 12 2 1 28 28 H 1.08989 * 109.47213 * 60.00181 * 13 12 2 29 29 H 1.08993 * 109.47100 * 299.99579 * 13 12 2 30 30 H 1.08996 * 109.46722 * 59.99757 * 14 13 12 31 31 H 1.08998 * 109.47252 * 299.99874 * 14 13 12 32 32 H 1.07997 * 120.00383 * 180.02562 * 18 16 15 33 33 H 1.08003 * 119.97527 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.98684 * 180.29516 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7854 -1.2290 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6130 -3.4622 8 14 2.3132 1.8792 -2.3174 9 1 3.5988 2.3951 -1.7822 10 1 2.1055 2.3992 -3.6927 11 1 1.1983 2.3275 -1.4450 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5962 -0.5329 3.5742 15 6 2.6600 0.4057 4.7515 16 6 3.8153 1.1272 5.0004 17 9 4.8856 0.9909 4.1874 18 6 3.8728 1.9887 6.0826 19 6 2.7774 2.1278 6.9142 20 6 1.6222 1.4124 6.6622 21 6 1.5649 0.5465 5.5842 22 17 0.1160 -0.3575 5.2730 23 1 -0.3634 0.4350 0.9310 24 1 -0.3633 0.5888 -0.8423 25 1 -0.3633 -1.0239 -0.0888 26 1 2.9369 -0.1047 -4.2554 27 1 1.4496 -1.4978 1.4100 28 1 1.0871 0.6163 2.5526 29 1 2.7588 1.0462 2.1183 30 1 3.5917 -0.9262 3.3682 31 1 1.9203 -1.3567 3.8031 32 1 4.7734 2.5521 6.2771 33 1 2.8228 2.7997 7.7586 34 1 0.7653 1.5253 7.3098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309768269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:22 Heat of formation + Delta-G solvation = -55.131345 kcal Electronic energy + Delta-G solvation = -18237.440359 eV Core-core repulsion = 15109.305718 eV Total energy + Delta-G solvation = -3128.134641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.98294 -40.34335 -38.15271 -37.46721 -35.20459 -33.87700 -31.45223 -31.23045 -28.17887 -27.25046 -24.22704 -23.83753 -22.24115 -21.86647 -19.07486 -18.73463 -17.88669 -17.01773 -16.80463 -16.48010 -16.17006 -15.76026 -15.56215 -15.04838 -14.59790 -14.45946 -14.40763 -14.18183 -13.73348 -13.48294 -13.11986 -12.91830 -12.86333 -12.64283 -12.39499 -12.37441 -12.08106 -11.90490 -11.78245 -11.71385 -11.21187 -10.70653 -9.82581 -9.73270 -9.03648 -8.27265 -6.28760 -0.03633 0.02681 1.03175 1.31660 1.33570 1.42746 2.33673 2.40501 3.02149 3.22877 3.37586 3.71399 3.82594 3.95906 4.15104 4.22982 4.30004 4.41509 4.46573 4.60282 4.68736 4.75813 4.79859 4.91207 5.00315 5.07227 5.13574 5.19187 5.22134 5.40758 5.66889 5.72674 6.03808 6.64055 6.75807 6.76180 7.34969 8.90333 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.005000 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.526172 B = 5598.651877 C = 6218.068831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.182 3.818 3 H 0.031 0.969 4 C -0.496 4.496 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.939 3.061 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.247 1.247 12 N -0.687 5.687 13 C 0.074 3.926 14 C -0.075 4.075 15 C -0.121 4.121 16 C 0.088 3.912 17 F -0.145 7.145 18 C -0.145 4.145 19 C -0.072 4.072 20 C -0.115 4.115 21 C -0.020 4.020 22 Cl -0.059 7.059 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.336 0.664 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 7.763 26.051 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.073 3.927 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.052 0.948 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.763 3.237 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.171 1.171 12 N -0.318 5.318 13 C -0.055 4.055 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.068 3.932 17 F -0.124 7.124 18 C -0.164 4.164 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.047 4.047 22 Cl -0.030 7.030 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.181 0.819 33 H 0.200 0.800 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.145 7.778 25.637 26.877 hybrid contribution -0.565 0.285 -0.859 1.067 sum -2.710 8.064 24.778 26.198 Atomic orbital electron populations 1.22467 0.98721 1.01085 0.99880 1.19485 0.90952 0.93771 0.88473 0.95125 1.21144 1.42239 0.94114 0.95969 0.94810 1.25817 0.94637 1.03239 0.94892 1.70043 1.48718 1.37716 1.02616 0.85875 0.79647 0.80570 0.77577 1.19851 1.20908 1.17093 1.60657 1.58317 1.09654 1.03134 1.21781 0.98614 0.95210 0.89907 1.20456 1.03277 0.96894 0.90655 1.19753 0.93095 1.00763 0.98733 1.17760 0.83667 0.99755 0.91972 1.91508 1.53936 1.94772 1.72154 1.21607 1.02407 0.98635 0.93708 1.21411 0.90196 0.98041 0.99287 1.21494 1.00745 0.95116 0.96022 1.20757 0.87946 0.98259 0.97764 1.98385 1.35364 1.73668 1.95572 0.93164 0.93866 0.93159 0.92584 0.84632 0.95024 0.93396 0.90856 0.89362 0.81946 0.80032 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.74 9.16 71.98 0.66 -6.08 16 2 C 0.18 8.71 2.23 44.17 0.10 8.81 16 3 H 0.03 1.50 4.95 -2.39 -0.01 1.48 16 4 C -0.50 -29.11 9.19 25.60 0.24 -28.88 16 5 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 6 C 0.01 0.65 5.47 84.66 0.46 1.12 16 7 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 8 Si 0.94 45.55 26.99 68.60 1.85 47.40 16 9 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.25 -11.04 6.82 99.48 0.68 -10.36 16 12 N -0.69 -28.96 6.23 -495.47 -3.09 -32.04 16 13 C 0.07 2.61 5.47 86.31 0.47 3.08 16 14 C -0.08 -2.22 5.03 29.85 0.15 -2.07 16 15 C -0.12 -3.06 5.14 -19.80 -0.10 -3.16 16 16 C 0.09 2.13 7.24 22.37 0.16 2.29 16 17 F -0.15 -4.24 16.48 44.97 0.74 -3.49 16 18 C -0.14 -2.33 10.03 22.32 0.22 -2.11 16 19 C -0.07 -0.81 10.04 22.26 0.22 -0.59 16 20 C -0.12 -1.64 9.83 22.30 0.22 -1.42 16 21 C -0.02 -0.43 6.31 22.32 0.14 -0.29 16 22 Cl -0.06 -1.26 27.29 -2.72 -0.07 -1.33 16 23 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 27 H 0.34 13.13 8.48 -89.70 -0.76 12.37 16 28 H 0.03 1.05 7.36 -2.39 -0.02 1.03 16 29 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 30 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16 31 H 0.09 2.43 6.90 -2.39 -0.02 2.41 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -69.45 304.71 3.00 -66.45 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.33 Total: 12.74 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.95 Total: -29.30 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.79 Total: -92.46 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.74 Total: -3.49 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.85 Total: 47.40 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -69.45 3.00 -66.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309768269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.318 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds