Wall clock time and date at job start Mon Mar 30 2020 01:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 C 1.52995 * 109.47269 * 180.02562 * 13 12 2 15 15 C 1.50694 * 109.47217 * 179.97438 * 14 13 12 16 16 C 1.38456 * 120.01824 * 269.72230 * 15 14 13 17 17 F 1.35105 * 120.01951 * 359.97438 * 16 15 14 18 18 C 1.38450 * 119.96526 * 179.76668 * 16 15 14 19 19 C 1.38233 * 119.99921 * 0.48355 * 18 16 15 20 20 C 1.38205 * 120.03273 * 359.77001 * 19 18 16 21 21 C 1.38293 * 120.02179 * 89.99806 * 15 14 13 22 22 Cl 1.73596 * 119.99995 * 0.02562 * 21 15 14 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00382 * 208.94825 * 12 2 1 28 28 H 1.09007 * 109.46656 * 300.00086 * 13 12 2 29 29 H 1.09000 * 109.47110 * 59.99426 * 13 12 2 30 30 H 1.09007 * 109.47135 * 299.99527 * 14 13 12 31 31 H 1.08998 * 109.47363 * 59.99171 * 14 13 12 32 32 H 1.08001 * 120.00302 * 180.23523 * 18 16 15 33 33 H 1.07989 * 119.98493 * 179.74690 * 19 18 16 34 34 H 1.08004 * 119.97795 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 6 2.5951 -0.5334 -3.5744 15 6 2.6590 0.4051 -4.7516 16 6 1.5643 0.5426 -5.5881 17 9 0.4383 -0.1649 -5.3495 18 6 1.6225 1.4088 -6.6666 19 6 2.7767 2.1283 -6.9137 20 6 3.8712 1.9871 -6.0818 21 6 3.8131 1.1253 -5.0006 22 17 5.1890 0.9478 -3.9571 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.9153 -0.5190 4.4376 27 1 2.9173 -1.1205 -1.0286 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 3.5905 -0.9274 -3.3690 31 1 1.9185 -1.3568 -3.8028 32 1 0.7676 1.5194 -7.3172 33 1 2.8233 2.8008 -7.7573 34 1 4.7727 2.5493 -6.2759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309768272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:24 Heat of formation + Delta-G solvation = -49.587932 kcal Electronic energy + Delta-G solvation = -18215.496908 eV Core-core repulsion = 15087.602648 eV Total energy + Delta-G solvation = -3127.894260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.97035 -40.34015 -38.13756 -37.47106 -35.31364 -33.84456 -31.49244 -31.35451 -28.43112 -27.14737 -24.27963 -23.83522 -22.18161 -21.78493 -18.90038 -18.71295 -17.91724 -17.33248 -16.90271 -16.63907 -15.93314 -15.82306 -15.62141 -15.09328 -14.82259 -14.42912 -14.40395 -14.15110 -14.03588 -13.56430 -13.08471 -12.91356 -12.68913 -12.60541 -12.38920 -12.27594 -12.18332 -11.95395 -11.77134 -11.45292 -11.09213 -10.79950 -9.82713 -9.72937 -9.22346 -8.33719 -6.38404 -0.03478 0.02905 1.04008 1.28660 1.32819 1.43511 2.28595 2.40698 3.01104 3.21171 3.29245 3.71298 3.78354 3.93398 4.15684 4.23215 4.28481 4.43272 4.49936 4.62367 4.67644 4.79159 4.83453 4.88908 4.96325 5.06447 5.13407 5.18055 5.21953 5.46176 5.58434 5.73126 5.95018 6.46136 6.59541 6.77972 7.28133 8.82715 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.004736 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.104650 B = 5910.845303 C = 6455.143771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.186 3.814 3 H -0.006 1.006 4 C -0.525 4.525 5 H 0.042 0.958 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.254 1.254 12 N -0.680 5.680 13 C 0.075 3.925 14 C -0.075 4.075 15 C -0.121 4.121 16 C 0.093 3.907 17 F -0.142 7.142 18 C -0.144 4.144 19 C -0.071 4.071 20 C -0.117 4.117 21 C -0.023 4.023 22 Cl -0.063 7.063 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.268 0.732 27 H 0.337 0.663 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 8.782 -24.966 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.076 3.924 3 H 0.011 0.989 4 C -0.563 4.563 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.778 3.222 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.178 1.178 12 N -0.311 5.311 13 C -0.055 4.055 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.073 3.927 17 F -0.120 7.120 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.135 4.135 21 C -0.050 4.050 22 Cl -0.034 7.034 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.183 0.817 33 H 0.200 0.800 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.146 8.477 -24.839 26.270 hybrid contribution 0.339 0.488 1.294 1.424 sum 1.485 8.966 -23.545 25.238 Atomic orbital electron populations 1.21980 0.97308 1.01079 0.98760 1.19376 0.92836 0.92100 0.88060 0.98851 1.21367 1.31667 1.12696 0.90613 0.93987 1.25768 0.97130 0.99947 0.95295 1.70028 1.47348 1.42409 0.98609 0.85820 0.79334 0.79878 0.77190 1.19025 1.22224 1.17836 1.60478 1.32888 1.32975 1.04744 1.21811 0.99607 0.93759 0.90319 1.20444 1.03173 0.96787 0.90832 1.19737 0.93196 1.00947 0.98482 1.17675 0.82398 0.95405 0.97219 1.91505 1.49232 1.76985 1.94317 1.21616 1.01653 0.96273 0.96679 1.21412 0.90177 0.97906 0.99427 1.21488 1.01543 0.97607 0.92895 1.20803 0.88734 1.00216 0.95235 1.98397 1.41787 1.96700 1.66540 0.94870 0.92928 0.92870 0.92347 0.84492 0.92109 0.96065 0.89926 0.90174 0.81684 0.80037 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.90 71.98 0.64 -5.35 16 2 C 0.19 9.05 2.19 44.17 0.10 9.14 16 3 H -0.01 -0.30 6.85 -2.39 -0.02 -0.32 16 4 C -0.53 -30.56 9.17 25.60 0.23 -30.32 16 5 H 0.04 2.68 7.86 -2.91 -0.02 2.66 16 6 C 0.02 0.98 5.45 84.66 0.46 1.44 16 7 N -0.94 -59.46 13.96 21.45 0.30 -59.17 16 8 Si 0.95 45.88 24.37 68.60 1.67 47.55 16 9 H -0.26 -12.14 6.88 99.48 0.68 -11.46 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.25 -11.57 6.52 99.48 0.65 -10.92 16 12 N -0.68 -28.76 6.30 -495.45 -3.12 -31.88 16 13 C 0.07 2.61 5.47 86.30 0.47 3.08 16 14 C -0.07 -2.19 5.03 29.84 0.15 -2.04 16 15 C -0.12 -3.03 5.14 -19.80 -0.10 -3.14 16 16 C 0.09 2.11 7.24 22.37 0.16 2.27 16 17 F -0.14 -3.75 16.47 44.97 0.74 -3.01 16 18 C -0.14 -2.16 10.03 22.32 0.22 -1.94 16 19 C -0.07 -0.80 10.04 22.26 0.22 -0.57 16 20 C -0.12 -1.73 9.83 22.30 0.22 -1.52 16 21 C -0.02 -0.50 6.31 22.32 0.14 -0.36 16 22 Cl -0.06 -1.51 27.30 -2.72 -0.07 -1.58 16 23 H 0.03 1.50 3.29 -2.39 -0.01 1.49 16 24 H 0.05 2.05 7.45 -2.39 -0.02 2.03 16 25 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.34 14.44 8.22 -89.70 -0.74 13.71 16 28 H 0.06 2.15 7.44 -2.38 -0.02 2.14 16 29 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 30 H 0.08 2.38 6.90 -2.38 -0.02 2.36 16 31 H 0.08 2.42 7.63 -2.39 -0.02 2.41 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.18 0.56 8.06 -2.92 -0.02 0.54 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -67.50 298.04 2.74 -64.76 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.31 Total: 12.63 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 2.92 Total: -29.30 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -2.82 Total: -91.05 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.74 Total: -3.01 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.55 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -67.50 2.74 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309768272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.169 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds