Wall clock time and date at job start Mon Mar 30 2020 01:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 119.99662 * 2 1 4 4 H 1.08002 * 119.99535 * 202.41069 * 3 2 1 5 5 C 1.38950 * 120.00207 * 22.41089 * 3 2 1 6 6 N 1.31407 * 119.99888 * 11.59473 * 5 3 2 7 7 Si 1.86802 * 119.99736 * 191.59220 * 5 3 2 8 8 H 1.48494 * 109.47202 * 90.00244 * 7 5 3 9 9 H 1.48505 * 109.46729 * 209.99864 * 7 5 3 10 10 H 1.48499 * 109.47154 * 329.99661 * 7 5 3 11 11 C 1.34776 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99518 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00243 * 359.97438 * 11 2 1 14 14 C 1.52991 * 109.47050 * 180.02562 * 13 11 2 15 15 S 1.81003 * 109.47182 * 180.02562 * 14 13 11 16 16 C 1.76197 * 100.00316 * 180.02562 * 15 14 13 17 17 N 1.31542 * 126.44907 * 359.97256 * 16 15 14 18 18 N 1.28428 * 110.49656 * 180.02562 * 17 16 15 19 19 N 1.28901 * 110.34285 * 359.97438 * 18 17 16 20 20 N 1.35395 * 126.44998 * 179.97438 * 16 15 14 21 21 C 1.46498 * 127.38953 * 359.96171 * 20 16 15 22 22 H 1.09000 * 109.46901 * 272.15505 * 1 2 3 23 23 H 1.09004 * 109.47660 * 32.15453 * 1 2 3 24 24 H 1.08999 * 109.47388 * 152.16014 * 1 2 3 25 25 H 0.96999 * 119.99969 * 180.02562 * 6 5 3 26 26 H 1.09004 * 109.46346 * 60.00286 * 13 11 2 27 27 H 1.08996 * 109.47195 * 300.00655 * 13 11 2 28 28 H 1.08994 * 109.47283 * 60.00327 * 14 13 11 29 29 H 1.09004 * 109.47139 * 299.99851 * 14 13 11 30 30 H 1.08995 * 109.46996 * 89.99958 * 21 20 16 31 31 H 1.09000 * 109.46915 * 209.99586 * 21 20 16 32 32 H 1.08997 * 109.47226 * 329.99667 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1693 1.2226 -0.3566 5 6 1.5344 2.3452 0.4588 6 7 0.3896 2.2707 1.0997 7 14 2.3336 4.0078 0.1645 8 1 1.8580 4.5638 -1.1277 9 1 1.9687 4.9343 1.2662 10 1 3.8092 3.8470 0.1212 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 16 1.4747 -5.2027 -0.0013 16 6 2.8245 -6.3353 -0.0004 17 7 4.1033 -6.0271 0.0001 18 7 4.8223 -7.0912 0.0001 19 7 4.0718 -8.1391 0.0003 20 7 2.7407 -7.6866 0.0000 21 6 1.5238 -8.5024 0.0004 22 1 -0.3633 0.0386 1.0270 23 1 -0.3634 0.8700 -0.5469 24 1 -0.3634 -0.9087 -0.4799 25 1 -0.0407 3.0790 1.4196 26 1 0.7585 -2.5298 -0.8904 27 1 0.7590 -2.5302 0.8896 28 1 3.0063 -3.5774 0.8894 29 1 3.0063 -3.5774 -0.8905 30 1 1.2219 -8.7050 -1.0271 31 1 1.7178 -9.4439 0.5144 32 1 0.7266 -7.9655 0.5143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330417420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:41 Heat of formation + Delta-G solvation = 90.237950 kcal Electronic energy + Delta-G solvation = -17842.173440 eV Core-core repulsion = 14774.598904 eV Total energy + Delta-G solvation = -3067.574536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.95743 -38.58851 -35.36305 -34.84879 -32.64066 -32.22604 -31.46456 -28.53646 -26.54256 -25.31458 -23.98315 -23.27452 -22.80503 -18.96731 -18.05546 -16.99572 -16.92899 -16.88114 -16.32503 -15.34062 -14.90858 -14.41011 -14.18942 -14.07226 -13.79719 -13.47046 -12.93850 -12.46192 -12.32178 -12.00919 -11.89683 -11.54928 -11.26145 -11.23454 -11.17476 -10.93515 -10.89938 -10.67485 -10.60913 -10.36369 -10.27189 -9.07009 -8.49927 -8.16619 -7.74477 -6.35726 -3.92529 0.57370 0.72523 1.79398 1.95661 2.12511 3.14386 3.23905 3.29703 3.80674 3.96785 4.10814 4.59354 4.60810 4.77144 4.89233 5.04837 5.07294 5.17929 5.22242 5.23463 5.62014 5.78413 5.85096 6.01252 6.19564 6.28997 6.81925 7.16832 7.53313 8.07160 8.29609 8.42654 9.13502 9.36464 9.90457 10.67864 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.003550 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.118814 B = 7884.810695 C = 8399.696594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.443 5.443 3 C -0.307 4.307 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.268 1.268 11 C 0.450 3.550 12 O -0.585 6.585 13 C -0.119 4.119 14 C -0.079 4.079 15 S 0.019 5.981 16 C 0.220 3.780 17 N -0.326 5.326 18 N -0.031 5.031 19 N -0.090 5.090 20 N -0.371 5.371 21 C 0.088 3.912 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.268 0.732 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -16.342 -2.009 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.162 5.162 3 C -0.435 4.435 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.235 3.765 12 O -0.469 6.469 13 C -0.161 4.161 14 C -0.227 4.227 15 S 0.245 5.755 16 C -0.165 4.165 17 N -0.182 5.182 18 N -0.027 5.027 19 N -0.078 5.078 20 N -0.170 5.170 21 C -0.054 4.054 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.843 -16.760 -1.918 17.852 hybrid contribution 0.355 0.964 -0.016 1.028 sum -5.488 -15.795 -1.935 16.833 Atomic orbital electron populations 1.21546 0.81053 0.98902 1.01846 1.43568 1.05576 1.04660 1.62397 1.19702 0.99606 0.83674 1.40484 0.88202 1.25347 0.96500 1.00128 0.95254 1.69989 1.17361 1.29358 1.35537 0.85899 0.79753 0.81080 0.77854 1.20349 1.20926 1.19281 1.19659 0.87950 0.84289 0.84575 1.90565 1.13710 1.86874 1.55800 1.21334 0.97976 0.92762 1.04049 1.23519 1.00381 0.89432 1.09418 1.85559 1.01268 0.98049 1.90617 1.27828 1.00099 0.87976 1.00614 1.75084 0.98151 1.21360 1.23598 1.77889 1.23164 0.92456 1.09212 1.82440 0.83428 1.19091 1.22810 1.51493 1.08564 1.04341 1.52640 1.22232 0.81689 0.96335 1.05116 0.92244 0.91166 0.95476 0.92209 0.89358 0.89155 0.87263 0.87319 0.88838 0.87757 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 8.52 59.85 0.51 2.82 16 2 N -0.44 -10.91 3.02 -122.19 -0.37 -11.28 16 3 C -0.31 -8.37 9.29 -14.93 -0.14 -8.51 16 4 H 0.10 2.87 7.41 -52.49 -0.39 2.48 16 5 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 6 N -0.88 -22.90 10.62 55.50 0.59 -22.31 16 7 Si 0.93 20.45 29.57 -169.99 -5.03 15.42 16 8 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 C 0.45 10.34 7.63 -10.99 -0.08 10.25 16 12 O -0.58 -15.65 15.67 5.55 0.09 -15.56 16 13 C -0.12 -1.92 4.22 -27.89 -0.12 -2.04 16 14 C -0.08 -1.20 4.52 37.15 0.17 -1.03 16 15 S 0.02 0.21 21.79 -107.50 -2.34 -2.13 16 16 C 0.22 2.99 8.15 -89.18 -0.73 2.26 16 17 N -0.33 -5.50 11.57 30.50 0.35 -5.14 16 18 N -0.03 -0.53 13.38 60.35 0.81 0.28 16 19 N -0.09 -1.31 13.93 60.35 0.84 -0.47 16 20 N -0.37 -4.31 4.09 -68.10 -0.28 -4.58 16 21 C 0.09 0.50 11.40 59.85 0.68 1.18 16 22 H 0.06 1.29 7.54 -51.93 -0.39 0.90 16 23 H 0.07 1.57 7.06 -51.93 -0.37 1.20 16 24 H 0.03 0.45 6.36 -51.93 -0.33 0.12 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.09 1.23 7.41 -51.93 -0.38 0.84 16 27 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 28 H 0.11 1.85 8.10 -51.92 -0.42 1.43 16 29 H 0.11 1.80 8.10 -51.91 -0.42 1.38 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.41 7.85 -51.93 -0.41 0.00 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -32.98 296.32 -4.18 -37.16 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.51 Total: -1.50 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 0.20 Total: 5.65 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 1.94 Total: -43.50 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.34 Total: -2.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.98 -4.18 -37.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.397 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds