Wall clock time and date at job start Mon Mar 30 2020 01:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 119.99662 * 2 1 4 4 H 1.08002 * 119.99535 * 202.41069 * 3 2 1 5 5 C 1.38950 * 120.00207 * 22.41089 * 3 2 1 6 6 N 1.31407 * 119.99888 * 11.59473 * 5 3 2 7 7 Si 1.86802 * 119.99736 * 191.59220 * 5 3 2 8 8 H 1.48494 * 109.47202 * 90.00244 * 7 5 3 9 9 H 1.48505 * 109.46729 * 209.99864 * 7 5 3 10 10 H 1.48499 * 109.47154 * 329.99661 * 7 5 3 11 11 C 1.34776 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99518 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00243 * 359.97438 * 11 2 1 14 14 C 1.52991 * 109.47050 * 180.02562 * 13 11 2 15 15 S 1.81003 * 109.47182 * 180.02562 * 14 13 11 16 16 C 1.76197 * 100.00316 * 180.02562 * 15 14 13 17 17 N 1.31542 * 126.44907 * 359.97256 * 16 15 14 18 18 N 1.28428 * 110.49656 * 180.02562 * 17 16 15 19 19 N 1.28901 * 110.34285 * 359.97438 * 18 17 16 20 20 N 1.35395 * 126.44998 * 179.97438 * 16 15 14 21 21 C 1.46498 * 127.38953 * 359.96171 * 20 16 15 22 22 H 1.09000 * 109.46901 * 272.15505 * 1 2 3 23 23 H 1.09004 * 109.47660 * 32.15453 * 1 2 3 24 24 H 1.08999 * 109.47388 * 152.16014 * 1 2 3 25 25 H 0.96999 * 119.99969 * 180.02562 * 6 5 3 26 26 H 1.09004 * 109.46346 * 60.00286 * 13 11 2 27 27 H 1.08996 * 109.47195 * 300.00655 * 13 11 2 28 28 H 1.08994 * 109.47283 * 60.00327 * 14 13 11 29 29 H 1.09004 * 109.47139 * 299.99851 * 14 13 11 30 30 H 1.08995 * 109.46996 * 89.99958 * 21 20 16 31 31 H 1.09000 * 109.46915 * 209.99586 * 21 20 16 32 32 H 1.08997 * 109.47226 * 329.99667 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1693 1.2226 -0.3566 5 6 1.5344 2.3452 0.4588 6 7 0.3896 2.2707 1.0997 7 14 2.3336 4.0078 0.1645 8 1 1.8580 4.5638 -1.1277 9 1 1.9687 4.9343 1.2662 10 1 3.8092 3.8470 0.1212 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 16 1.4747 -5.2027 -0.0013 16 6 2.8245 -6.3353 -0.0004 17 7 4.1033 -6.0271 0.0001 18 7 4.8223 -7.0912 0.0001 19 7 4.0718 -8.1391 0.0003 20 7 2.7407 -7.6866 0.0000 21 6 1.5238 -8.5024 0.0004 22 1 -0.3633 0.0386 1.0270 23 1 -0.3634 0.8700 -0.5469 24 1 -0.3634 -0.9087 -0.4799 25 1 -0.0407 3.0790 1.4196 26 1 0.7585 -2.5298 -0.8904 27 1 0.7590 -2.5302 0.8896 28 1 3.0063 -3.5774 0.8894 29 1 3.0063 -3.5774 -0.8905 30 1 1.2219 -8.7050 -1.0271 31 1 1.7178 -9.4439 0.5144 32 1 0.7266 -7.9655 0.5143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330417420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:41 Heat of formation + Delta-G solvation = 66.733224 kcal Electronic energy + Delta-G solvation = -17843.192681 eV Core-core repulsion = 14774.598904 eV Total energy + Delta-G solvation = -3068.593777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.02003 -40.39068 -36.73988 -36.24883 -34.12197 -33.50457 -33.18107 -29.25660 -28.34148 -26.92482 -25.32166 -24.42175 -24.02286 -20.61263 -19.06003 -18.88422 -18.08962 -17.92546 -17.76747 -16.85984 -16.58706 -15.93276 -15.52450 -15.08335 -14.93690 -14.68843 -14.20957 -13.74832 -13.56064 -13.49228 -13.25549 -13.15104 -12.98725 -12.62366 -12.59008 -12.31623 -12.24692 -12.12708 -12.03273 -11.79400 -11.53232 -10.99686 -10.37603 -9.67225 -9.09609 -8.31617 -5.96756 -0.41940 -0.29260 0.67343 0.98644 1.13407 1.38244 1.42700 1.54175 2.03990 2.29689 3.10767 3.11632 3.13613 3.65668 3.74803 3.91327 4.08398 4.12616 4.26261 4.46656 4.48830 4.58468 4.71071 4.79986 4.96052 4.98938 5.11707 5.46508 5.47107 6.11053 6.49733 7.18854 7.20211 7.49677 8.04358 8.69478 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.047117 B = 0.003550 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.118814 B = 7884.810695 C = 8399.696594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.462 5.462 3 C -0.346 4.346 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.986 3.014 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.279 1.279 11 C 0.439 3.561 12 O -0.634 6.634 13 C -0.103 4.103 14 C -0.092 4.092 15 S 0.116 5.884 16 C 0.201 3.799 17 N -0.366 5.366 18 N -0.064 5.064 19 N -0.096 5.096 20 N -0.355 5.355 21 C 0.070 3.930 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.273 0.727 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -17.638 -2.198 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.181 5.181 3 C -0.474 4.474 4 H 0.087 0.913 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.204 1.204 11 C 0.227 3.773 12 O -0.522 6.522 13 C -0.145 4.145 14 C -0.241 4.241 15 S 0.342 5.658 16 C -0.183 4.183 17 N -0.223 5.223 18 N -0.059 5.059 19 N -0.084 5.084 20 N -0.155 5.155 21 C -0.069 4.069 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.628 -18.082 -2.107 20.146 hybrid contribution 1.118 1.232 0.056 1.665 sum -7.510 -16.849 -2.051 18.561 Atomic orbital electron populations 1.21535 0.78900 1.00599 1.01469 1.43849 1.07019 1.04491 1.62718 1.19612 0.99225 0.85951 1.42591 0.91288 1.26007 0.97005 1.02608 0.94550 1.70050 1.17724 1.30347 1.35135 0.85045 0.78174 0.77358 0.78456 1.19006 1.19832 1.20418 1.20820 0.87858 0.86150 0.82485 1.90530 1.16307 1.87976 1.57366 1.21220 0.97612 0.88884 1.06780 1.23302 1.00685 0.92664 1.07498 1.85037 0.97310 0.93447 1.90036 1.28198 1.00028 0.89352 1.00769 1.74969 0.99887 1.22350 1.25090 1.77859 1.24245 0.92884 1.10948 1.82302 0.84802 1.18876 1.22394 1.51822 1.08959 1.04063 1.50661 1.22872 0.79830 0.96827 1.07376 0.93282 0.93042 0.90415 0.91701 0.85921 0.86573 0.89626 0.89248 0.86415 0.85794 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.76 8.52 127.77 1.09 5.85 16 2 N -0.46 -22.89 3.02 -658.89 -1.99 -24.88 16 3 C -0.35 -19.43 9.29 84.04 0.78 -18.65 16 4 H 0.07 4.20 7.41 -2.91 -0.02 4.18 16 5 C 0.00 0.02 5.11 84.93 0.43 0.45 16 6 N -0.89 -46.07 10.62 21.66 0.23 -45.84 16 7 Si 0.99 42.18 29.57 68.60 2.03 44.21 16 8 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.44 20.33 7.63 87.66 0.67 20.99 16 12 O -0.63 -35.38 15.67 -3.06 -0.05 -35.43 16 13 C -0.10 -3.11 4.22 29.84 0.13 -2.98 16 14 C -0.09 -2.71 4.52 71.98 0.33 -2.39 16 15 S 0.12 2.24 21.79 -56.49 -1.23 1.01 16 16 C 0.20 5.13 8.15 179.84 1.47 6.60 16 17 N -0.37 -12.44 11.57 -57.41 -0.66 -13.10 16 18 N -0.06 -2.17 13.38 37.02 0.50 -1.68 16 19 N -0.10 -2.69 13.93 37.02 0.52 -2.18 16 20 N -0.35 -7.43 4.09 -369.38 -1.51 -8.95 16 21 C 0.07 0.52 11.40 127.77 1.46 1.98 16 22 H 0.05 2.07 7.54 -2.39 -0.02 2.05 16 23 H 0.05 2.25 7.06 -2.39 -0.02 2.23 16 24 H 0.08 2.30 6.36 -2.39 -0.02 2.28 16 25 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 26 H 0.12 2.89 7.41 -2.38 -0.02 2.87 16 27 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 28 H 0.09 2.94 8.10 -2.40 -0.02 2.92 16 29 H 0.09 3.00 8.10 -2.39 -0.02 2.98 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.12 0.40 7.85 -2.39 -0.02 0.38 16 Total: -1.00 -76.29 296.32 5.32 -70.97 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.15 Total: 4.00 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.35 Total: 11.86 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -2.92 Total: -96.62 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.05 Total: -35.43 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.23 Total: 1.01 kcal Total: -76.29 5.32 -70.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.702 kcal (2) G-P(sol) polarization free energy of solvation -76.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds