Wall clock time and date at job start Mon Mar 30 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35050 * 126.39086 * 2 1 4 4 N 1.30502 * 108.69426 * 180.02562 * 3 2 1 5 5 C 1.34125 * 109.26182 * 0.02562 * 4 3 2 6 6 S 1.76196 * 125.99334 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.40347 * 203.56301 * 6 5 4 8 8 O 1.42105 * 106.40121 * 336.48257 * 6 5 4 9 9 N 1.65602 * 107.22000 * 90.02113 * 6 5 4 10 10 C 1.36937 * 119.99629 * 89.99877 * 9 6 5 11 11 H 1.07992 * 120.00328 * 228.28689 * 10 9 6 12 12 C 1.38815 * 120.00010 * 48.29230 * 10 9 6 13 13 N 1.31622 * 120.00138 * 25.31881 * 12 10 9 14 14 Si 1.86802 * 120.00181 * 205.31574 * 12 10 9 15 15 H 1.48504 * 109.46887 * 59.99815 * 14 12 10 16 16 H 1.48493 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46886 * 300.00247 * 14 12 10 18 18 C 1.46495 * 119.99857 * 270.00333 * 9 6 5 19 19 C 1.53002 * 117.49536 * 188.22726 * 18 9 6 20 20 C 1.53002 * 117.49686 * 119.60684 * 18 9 6 21 21 C 1.34674 * 108.01496 * 0.02562 * 5 4 3 22 22 H 1.09000 * 109.47041 * 89.97566 * 1 2 3 23 23 H 1.09001 * 109.46440 * 209.97219 * 1 2 3 24 24 H 1.08998 * 109.47311 * 329.96830 * 1 2 3 25 25 H 1.07994 * 125.65410 * 0.02562 * 3 2 1 26 26 H 0.96996 * 120.00128 * 174.22966 * 13 12 10 27 27 H 1.08997 * 115.55231 * 333.93254 * 18 9 6 28 28 H 1.09007 * 117.49899 * 359.97438 * 19 18 9 29 29 H 1.09000 * 117.49918 * 145.02336 * 19 18 9 30 30 H 1.09003 * 117.49492 * 214.97409 * 20 18 9 31 31 H 1.08995 * 117.49845 * 359.97437 * 20 18 9 32 32 H 1.08009 * 126.58585 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6503 -0.0015 6 16 4.9995 -1.6465 -0.0031 7 8 4.6237 -2.9037 -0.5487 8 8 6.0368 -0.8419 -0.5473 9 7 5.4046 -1.9252 1.5782 10 6 4.9015 -3.0186 2.2313 11 1 4.4610 -2.9071 3.2109 12 6 4.9580 -4.2705 1.6341 13 7 5.8814 -4.5285 0.7324 14 14 3.7234 -5.5890 2.1103 15 1 2.3492 -5.1111 1.8126 16 1 3.9966 -6.8260 1.3354 17 1 3.8432 -5.8782 3.5619 18 6 6.3010 -1.0020 2.2783 19 6 6.7911 -1.4114 3.6687 20 6 5.7562 -0.2942 3.5206 21 6 2.2773 -1.1016 -0.0021 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3632 -0.8903 0.5134 24 1 -0.3634 0.8897 0.5143 25 1 1.9333 2.1145 0.0004 26 1 5.9744 -5.4260 0.3765 27 1 6.9916 -0.4458 1.6444 28 1 6.4462 -2.3675 4.0626 29 1 7.8045 -1.1247 3.9497 30 1 6.0888 0.7275 3.7042 31 1 4.7308 -0.5152 3.8167 32 1 1.9614 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331457451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:53 Heat of formation + Delta-G solvation = 34.525021 kcal Electronic energy + Delta-G solvation = -19639.986790 eV Core-core repulsion = 16537.703609 eV Total energy + Delta-G solvation = -3102.283181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54945 -37.01237 -35.44186 -33.97028 -33.72777 -33.15861 -30.50517 -29.19828 -26.90060 -24.82784 -21.60225 -21.38406 -20.87962 -20.38635 -18.72984 -17.64361 -16.28280 -15.85755 -15.49874 -15.01576 -14.71776 -14.32477 -13.92138 -13.74905 -13.63283 -12.97360 -12.83093 -12.72157 -12.24123 -11.59371 -11.32251 -11.05546 -10.74447 -10.50266 -10.35445 -10.30200 -10.19581 -10.12285 -9.82214 -9.43305 -9.37490 -9.21541 -8.58575 -8.31773 -7.41281 -6.43550 -4.05368 2.07072 2.31460 3.02562 3.22504 3.26865 3.29505 3.33411 4.16546 4.67763 4.76866 4.86830 4.97917 5.02330 5.03426 5.16309 5.25941 5.57144 5.77520 5.88711 5.94842 5.99840 6.38793 6.43860 6.51476 6.64782 6.84491 6.87895 7.10658 7.44294 7.50809 7.65798 8.29824 8.36942 8.99878 9.43915 10.62742 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.009962 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.295831 B = 2810.066112 C = 3442.305024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.469 5.469 3 C 0.155 3.845 4 N -0.420 5.420 5 C -0.534 4.534 6 S 2.605 3.395 7 O -0.946 6.946 8 O -1.001 7.001 9 N -0.787 5.787 10 C -0.296 4.296 11 H 0.079 0.921 12 C 0.063 3.937 13 N -0.778 5.778 14 Si 0.923 3.077 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.103 3.897 19 C -0.166 4.166 20 C -0.210 4.210 21 C 0.045 3.955 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.203 0.797 26 H 0.279 0.721 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 5.406 2.909 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.153 5.153 3 C -0.129 4.129 4 N -0.137 5.137 5 C -0.736 4.736 6 S 2.700 3.300 7 O -0.934 6.934 8 O -0.990 6.990 9 N -0.610 5.610 10 C -0.442 4.442 11 H 0.097 0.903 12 C -0.155 4.155 13 N -0.412 5.412 14 Si 0.749 3.251 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.007 4.007 19 C -0.205 4.205 20 C -0.250 4.250 21 C -0.092 4.092 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.219 0.781 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.632 5.741 1.729 10.510 hybrid contribution -2.186 -0.667 0.382 2.317 sum -10.818 5.074 2.110 12.134 Atomic orbital electron populations 1.22026 0.77120 1.04583 1.03353 1.45681 1.07434 1.07449 1.54726 1.25214 0.86521 0.93338 1.07832 1.70333 1.18572 1.09884 1.14941 1.35459 1.19065 1.02053 1.17052 1.08953 0.72994 0.72097 0.75964 1.93448 1.83526 1.38602 1.77843 1.93304 1.55340 1.71398 1.78962 1.52328 1.49570 1.27563 1.31586 1.18804 1.38240 0.83437 1.03674 0.90336 1.25647 0.95740 0.98634 0.95517 1.69818 1.26429 1.22058 1.22928 0.86081 0.81335 0.79604 0.78086 1.19620 1.20674 1.19950 1.21330 0.95639 0.95515 0.88166 1.23071 0.97482 0.99794 1.00192 1.23267 0.99154 0.96205 1.06413 1.22710 0.89993 0.92756 1.03728 0.90717 0.89590 0.89597 0.78051 0.91018 0.86359 0.87480 0.89895 0.89937 0.89398 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 11.18 59.85 0.67 1.33 16 2 N -0.47 -7.31 3.15 -125.99 -0.40 -7.70 16 3 C 0.16 2.60 12.56 -90.37 -1.14 1.46 16 4 N -0.42 -9.28 11.25 -13.86 -0.16 -9.43 16 5 C -0.53 -12.42 7.13 -17.81 -0.13 -12.55 16 6 S 2.61 69.39 5.60 -107.50 -0.60 68.79 16 7 O -0.95 -26.90 13.84 -57.17 -0.79 -27.70 16 8 O -1.00 -29.08 16.80 -57.17 -0.96 -30.04 16 9 N -0.79 -19.94 3.05 -53.43 -0.16 -20.11 16 10 C -0.30 -7.47 7.69 -15.06 -0.12 -7.58 16 11 H 0.08 1.87 7.72 -52.49 -0.41 1.47 16 12 C 0.06 1.62 4.00 -17.43 -0.07 1.55 16 13 N -0.78 -21.62 11.53 55.49 0.64 -20.98 16 14 Si 0.92 19.86 29.63 -169.99 -5.04 14.83 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 C 0.10 2.32 6.38 -67.93 -0.43 1.89 16 19 C -0.17 -3.21 9.83 -26.73 -0.26 -3.47 16 20 C -0.21 -4.00 10.28 -26.73 -0.27 -4.27 16 21 C 0.05 0.89 11.31 -16.56 -0.19 0.70 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 26 H 0.28 7.30 8.32 -40.82 -0.34 6.96 16 27 H 0.12 2.71 7.38 -51.93 -0.38 2.33 16 28 H 0.11 2.16 6.96 -51.92 -0.36 1.80 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.18 3.33 8.06 -52.48 -0.42 2.91 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -35.18 291.90 -8.67 -43.85 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.67 Total: 5.02 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -1.94 Total: -20.94 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.08 Total: -58.22 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -1.75 Total: -57.73 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.04 Total: 14.83 kcal Atomic # 16 Polarization: 69.39 SS G_CDS: -0.60 Total: 68.79 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.18 -8.67 -43.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331457451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.375 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds