Wall clock time and date at job start Mon Mar 30 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00606 * 2 1 4 4 H 1.48499 * 109.47458 * 270.00533 * 3 2 1 5 5 H 1.48502 * 109.46718 * 30.00342 * 3 2 1 6 6 H 1.48493 * 109.47252 * 149.99915 * 3 2 1 7 7 C 1.38808 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99709 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46931 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00295 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00266 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64441 * 359.96008 * 13 11 10 15 15 C 1.54907 * 104.82903 * 204.16553 * 14 13 11 16 16 C 1.55158 * 101.58231 * 322.98701 * 15 14 13 17 17 O 1.42888 * 110.87524 * 277.06931 * 16 15 14 18 18 C 1.53006 * 110.72002 * 153.86469 * 16 15 14 19 19 C 1.52994 * 117.49701 * 140.46746 * 18 16 15 20 20 C 1.53001 * 117.49628 * 71.80915 * 18 16 15 21 21 C 1.47023 * 125.64867 * 180.02562 * 13 11 10 22 22 H 0.97008 * 119.99601 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47313 * 60.00349 * 10 9 7 24 24 H 1.08999 * 109.47363 * 299.99900 * 10 9 7 25 25 H 1.09005 * 110.36751 * 322.99928 * 14 13 11 26 26 H 1.08993 * 110.36964 * 85.21472 * 14 13 11 27 27 H 1.09007 * 111.00447 * 204.91507 * 15 14 13 28 28 H 1.08997 * 111.01114 * 81.06414 * 15 14 13 29 29 H 0.96708 * 114.00266 * 56.75191 * 17 16 15 30 30 H 1.08997 * 115.54787 * 286.14030 * 18 16 15 31 31 H 1.09004 * 117.49884 * 359.97438 * 19 18 16 32 32 H 1.08999 * 117.49953 * 145.02339 * 19 18 16 33 33 H 1.08997 * 117.49821 * 214.97757 * 20 18 16 34 34 H 1.09001 * 117.49620 * 359.97386 * 20 18 16 35 35 H 1.09002 * 109.88216 * 59.48925 * 21 13 11 36 36 H 1.09002 * 109.88176 * 298.31996 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4480 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0021 13 7 2.8439 -6.3433 -0.0008 14 6 4.3148 -6.2450 -0.0005 15 6 4.8016 -7.5819 -0.6131 16 6 3.7725 -8.5853 -0.0287 17 8 4.1454 -8.9863 1.2912 18 6 3.6265 -9.8044 -0.9417 19 6 3.4882 -11.1742 -0.2744 20 6 4.7899 -10.7971 -0.9861 21 6 2.4662 -7.7641 -0.0018 22 1 -0.4850 0.8401 0.0004 23 1 3.1243 -3.7315 0.8894 24 1 3.1243 -3.7314 -0.8905 25 1 4.6391 -5.4055 -0.6157 26 1 4.6875 -6.1344 1.0177 27 1 5.8118 -7.8196 -0.2797 28 1 4.7471 -7.5559 -1.7014 29 1 4.2513 -8.2511 1.9105 30 1 3.0727 -9.6363 -1.8653 31 1 3.5018 -11.2070 0.8151 32 1 2.8438 -11.9075 -0.7592 33 1 5.0012 -11.2824 -1.9389 34 1 5.6594 -10.5815 -0.3653 35 1 1.8690 -7.9883 -0.8857 36 1 1.9001 -7.9979 0.8998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331783847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:54 Heat of formation + Delta-G solvation = -56.744053 kcal Electronic energy + Delta-G solvation = -18472.157324 eV Core-core repulsion = 15469.456762 eV Total energy + Delta-G solvation = -3002.700562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45797 -38.49080 -36.31788 -35.06012 -32.44803 -31.06767 -29.80103 -28.22255 -25.52151 -23.92823 -22.81558 -22.17750 -20.33342 -19.37948 -17.88681 -17.10890 -16.59404 -16.25777 -15.62588 -15.08239 -14.82903 -14.79304 -14.22858 -13.90644 -13.57588 -13.01516 -12.86777 -12.62698 -12.45105 -12.36020 -11.83633 -11.68303 -11.64312 -11.29529 -11.07803 -11.04084 -10.91134 -10.78703 -10.46406 -9.90892 -9.83264 -9.44100 -9.08448 -8.58625 -8.25880 -6.52775 -6.23421 -3.94503 2.83251 3.01494 3.21066 3.23945 3.28887 3.44627 3.56795 3.85802 4.17932 4.23160 4.26031 4.37876 4.71808 4.83144 4.89223 5.01963 5.07127 5.11753 5.16471 5.40966 5.44413 5.54129 5.55377 5.58499 5.68490 5.77620 5.84282 5.88341 5.92567 6.02386 6.09526 6.32859 7.31340 7.57108 7.59287 8.33237 8.50612 9.21725 10.84007 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.048759 B = 0.003542 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.117711 B = 7902.522171 C = 8232.377830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.628 5.628 14 C 0.094 3.906 15 C -0.155 4.155 16 C 0.155 3.845 17 O -0.549 6.549 18 C -0.143 4.143 19 C -0.165 4.165 20 C -0.169 4.169 21 C 0.085 3.915 22 H 0.269 0.731 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.381 0.619 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 -18.643 -0.876 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.387 6.387 13 N -0.366 5.366 14 C -0.029 4.029 15 C -0.193 4.193 16 C 0.113 3.887 17 O -0.355 6.355 18 C -0.161 4.161 19 C -0.202 4.202 20 C -0.206 4.206 21 C -0.038 4.038 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.308 -19.336 -1.137 21.941 hybrid contribution 2.007 1.932 0.194 2.793 sum 12.315 -17.404 -0.943 21.341 Atomic orbital electron populations 1.70020 1.05965 1.27488 1.46758 1.25000 0.95035 0.99045 0.94500 0.86157 0.79402 0.81516 0.78361 1.20251 1.20730 1.19682 1.22855 0.94885 0.91578 1.59082 0.90922 1.85423 1.04890 0.96355 1.96715 1.23507 1.06518 0.94888 1.04783 1.20071 0.85679 0.85430 0.75177 1.90718 1.14953 1.85114 1.47907 1.48539 1.06551 1.05483 1.76056 1.22355 0.80643 0.98793 1.01099 1.23446 0.99704 0.93971 1.02201 1.21443 0.92102 0.92041 0.83078 1.86470 1.91359 1.37665 1.19995 1.22085 1.04576 0.89459 1.00007 1.22905 0.99849 0.96449 1.00991 1.22903 0.92826 1.02560 1.02301 1.22570 0.96979 0.80874 1.03387 0.92150 0.89282 0.89286 0.89799 0.91328 0.89026 0.89301 0.77057 0.86402 0.87688 0.89033 0.88911 0.88492 0.90559 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.99 5.16 36.01 0.19 -2.81 16 11 C 0.55 10.62 7.87 -10.98 -0.09 10.53 16 12 O -0.51 -12.07 16.19 5.55 0.09 -11.98 16 13 N -0.63 -8.94 3.33 -170.52 -0.57 -9.50 16 14 C 0.09 0.96 6.42 -2.53 -0.02 0.94 16 15 C -0.16 -1.27 6.20 -24.58 -0.15 -1.42 16 16 C 0.15 1.44 1.10 -88.78 -0.10 1.34 16 17 O -0.55 -5.00 11.62 -35.23 -0.41 -5.41 16 18 C -0.14 -1.23 5.00 -90.62 -0.45 -1.68 16 19 C -0.17 -1.38 9.91 -26.70 -0.26 -1.64 16 20 C -0.17 -1.28 10.05 -26.69 -0.27 -1.55 16 21 C 0.09 1.06 6.20 -3.06 -0.02 1.04 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 24 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 25 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 26 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.72 8.05 -51.93 -0.42 0.31 16 29 H 0.38 2.65 8.59 45.56 0.39 3.04 16 30 H 0.12 0.96 7.97 -51.93 -0.41 0.55 16 31 H 0.10 0.98 7.26 -51.93 -0.38 0.60 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.99 7.70 -51.93 -0.40 0.59 16 36 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -34.31 316.45 -8.10 -42.41 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.50 Total: 0.90 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.97 Total: -8.20 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.17 Total: -34.92 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.32 Total: -17.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.31 -8.10 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.338 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds