Wall clock time and date at job start Mon Mar 30 2020 01:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00606 * 2 1 4 4 H 1.48499 * 109.47458 * 270.00533 * 3 2 1 5 5 H 1.48502 * 109.46718 * 30.00342 * 3 2 1 6 6 H 1.48493 * 109.47252 * 149.99915 * 3 2 1 7 7 C 1.38808 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99709 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46931 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00295 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00266 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64441 * 359.96008 * 13 11 10 15 15 C 1.54907 * 104.82903 * 204.16553 * 14 13 11 16 16 C 1.55158 * 101.58231 * 322.98701 * 15 14 13 17 17 O 1.42888 * 110.87524 * 277.06931 * 16 15 14 18 18 C 1.53006 * 110.72002 * 153.86469 * 16 15 14 19 19 C 1.52994 * 117.49701 * 140.46746 * 18 16 15 20 20 C 1.53001 * 117.49628 * 71.80915 * 18 16 15 21 21 C 1.47023 * 125.64867 * 180.02562 * 13 11 10 22 22 H 0.97008 * 119.99601 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47313 * 60.00349 * 10 9 7 24 24 H 1.08999 * 109.47363 * 299.99900 * 10 9 7 25 25 H 1.09005 * 110.36751 * 322.99928 * 14 13 11 26 26 H 1.08993 * 110.36964 * 85.21472 * 14 13 11 27 27 H 1.09007 * 111.00447 * 204.91507 * 15 14 13 28 28 H 1.08997 * 111.01114 * 81.06414 * 15 14 13 29 29 H 0.96708 * 114.00266 * 56.75191 * 17 16 15 30 30 H 1.08997 * 115.54787 * 286.14030 * 18 16 15 31 31 H 1.09004 * 117.49884 * 359.97438 * 19 18 16 32 32 H 1.08999 * 117.49953 * 145.02339 * 19 18 16 33 33 H 1.08997 * 117.49821 * 214.97757 * 20 18 16 34 34 H 1.09001 * 117.49620 * 359.97386 * 20 18 16 35 35 H 1.09002 * 109.88216 * 59.48925 * 21 13 11 36 36 H 1.09002 * 109.88176 * 298.31996 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4480 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0021 13 7 2.8439 -6.3433 -0.0008 14 6 4.3148 -6.2450 -0.0005 15 6 4.8016 -7.5819 -0.6131 16 6 3.7725 -8.5853 -0.0287 17 8 4.1454 -8.9863 1.2912 18 6 3.6265 -9.8044 -0.9417 19 6 3.4882 -11.1742 -0.2744 20 6 4.7899 -10.7971 -0.9861 21 6 2.4662 -7.7641 -0.0018 22 1 -0.4850 0.8401 0.0004 23 1 3.1243 -3.7315 0.8894 24 1 3.1243 -3.7314 -0.8905 25 1 4.6391 -5.4055 -0.6157 26 1 4.6875 -6.1344 1.0177 27 1 5.8118 -7.8196 -0.2797 28 1 4.7471 -7.5559 -1.7014 29 1 4.2513 -8.2511 1.9105 30 1 3.0727 -9.6363 -1.8653 31 1 3.5018 -11.2070 0.8151 32 1 2.8438 -11.9075 -0.7592 33 1 5.0012 -11.2824 -1.9389 34 1 5.6594 -10.5815 -0.3653 35 1 1.8690 -7.9883 -0.8857 36 1 1.9001 -7.9979 0.8998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331783847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:53 Heat of formation + Delta-G solvation = -81.401498 kcal Electronic energy + Delta-G solvation = -18473.226551 eV Core-core repulsion = 15469.456762 eV Total energy + Delta-G solvation = -3003.769789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47757 -39.72082 -37.22058 -35.91739 -34.59878 -32.28057 -30.91020 -29.39116 -27.67801 -24.99606 -23.50521 -22.88113 -21.05583 -20.77335 -19.63190 -18.35334 -17.65621 -17.41989 -16.89357 -16.49525 -16.35040 -15.94014 -15.60716 -15.16561 -14.68029 -14.51871 -13.95883 -13.72519 -13.65996 -13.29858 -13.17520 -13.12693 -12.89385 -12.63006 -12.38061 -12.25836 -12.02910 -11.73916 -11.59654 -11.19455 -11.15279 -10.97162 -10.59237 -10.30192 -9.79717 -8.70362 -8.35807 -6.15119 1.21071 1.42608 1.43692 1.50131 1.55541 2.00681 2.26065 2.78907 2.98516 3.13586 3.24161 3.45404 3.50285 3.62124 3.85706 4.03683 4.16612 4.21959 4.26356 4.31186 4.37347 4.41328 4.60182 4.72458 4.83142 4.87809 4.97705 5.03470 5.14513 5.23016 5.31537 5.38847 5.40489 6.18506 6.29216 6.69590 7.04507 7.05356 8.73538 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.048759 B = 0.003542 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.117711 B = 7902.522171 C = 8232.377830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.545 3.455 12 O -0.568 6.568 13 N -0.616 5.616 14 C 0.084 3.916 15 C -0.142 4.142 16 C 0.167 3.833 17 O -0.553 6.553 18 C -0.154 4.154 19 C -0.173 4.173 20 C -0.153 4.153 21 C 0.081 3.919 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.391 0.609 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.678 -19.026 -1.092 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.333 3.667 12 O -0.446 6.446 13 N -0.352 5.352 14 C -0.038 4.038 15 C -0.179 4.179 16 C 0.125 3.875 17 O -0.361 6.361 18 C -0.173 4.173 19 C -0.210 4.210 20 C -0.190 4.190 21 C -0.042 4.042 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.241 0.759 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.691 -19.760 -1.347 24.077 hybrid contribution 1.020 1.892 0.286 2.168 sum 14.711 -17.868 -1.062 23.169 Atomic orbital electron populations 1.70191 1.08046 1.28663 1.47914 1.26162 0.95978 1.03401 0.93652 0.84922 0.78210 0.75824 0.78829 1.19258 1.20353 1.18029 1.23192 0.95361 0.91763 1.59032 0.89757 1.85637 1.10572 0.99393 1.97054 1.23295 1.03428 0.93654 1.06556 1.19864 0.85418 0.86058 0.75336 1.90695 1.17246 1.85799 1.50899 1.48442 1.08128 1.05160 1.73430 1.22758 0.77642 1.00383 1.03001 1.23427 1.00351 0.91853 1.02315 1.21322 0.90486 0.92123 0.83562 1.86477 1.91062 1.38403 1.20111 1.22130 1.05841 0.89282 1.00025 1.22927 1.01036 0.96616 1.00460 1.22957 0.92179 1.01168 1.02719 1.22749 0.98974 0.80162 1.02320 0.91962 0.87299 0.87340 0.89197 0.88976 0.86468 0.88880 0.75937 0.86167 0.88869 0.88238 0.87429 0.88329 0.91501 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.55 -31.12 9.50 67.96 0.65 -30.48 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.12 -4.77 5.16 71.24 0.37 -4.40 16 11 C 0.54 21.20 7.87 87.66 0.69 21.89 16 12 O -0.57 -27.76 16.19 -3.04 -0.05 -27.81 16 13 N -0.62 -16.82 3.33 -811.79 -2.70 -19.52 16 14 C 0.08 1.44 6.42 86.85 0.56 1.99 16 15 C -0.14 -1.82 6.20 31.99 0.20 -1.62 16 16 C 0.17 2.73 1.10 -9.60 -0.01 2.72 16 17 O -0.55 -8.79 11.62 -148.98 -1.73 -10.52 16 18 C -0.15 -2.34 5.00 -10.79 -0.05 -2.39 16 19 C -0.17 -2.61 9.91 30.62 0.30 -2.30 16 20 C -0.15 -1.89 10.05 30.62 0.31 -1.58 16 21 C 0.08 1.96 6.20 86.73 0.54 2.50 16 22 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 23 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 24 H 0.11 3.93 7.85 -2.40 -0.02 3.92 16 25 H 0.09 1.50 7.48 -2.38 -0.02 1.48 16 26 H 0.09 1.23 7.96 -2.39 -0.02 1.21 16 27 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.09 1.18 8.05 -2.39 -0.02 1.17 16 29 H 0.39 4.42 8.59 -74.05 -0.64 3.78 16 30 H 0.12 1.76 7.97 -2.39 -0.02 1.74 16 31 H 0.09 1.63 7.26 -2.39 -0.02 1.62 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.76 7.70 -2.39 -0.02 1.74 16 36 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 Total: -1.00 -77.04 316.45 1.13 -75.92 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.44 Total: 14.76 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.01 Total: -12.48 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.41 Total: -75.39 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.78 Total: -38.33 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -77.04 1.13 -75.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331783847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.483 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds